Experiment: Spectinomycin 0.15 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25530 and AO353_25535 are separated by 5 nucleotides AO353_25535 and AO353_25540 overlap by 4 nucleotides
AO353_25530: AO353_25530 - UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, at 5,631,449 to 5,632,588
_25530
AO353_25535: AO353_25535 - UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 5,632,594 to 5,633,613
_25535
AO353_25540: AO353_25540 - UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 5,633,610 to 5,635,601
_25540
Position (kb) 5632
5633
5634 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5631.744 kb on + strand, within AO353_25530 at 5631.745 kb on - strand, within AO353_25530 at 5631.840 kb on - strand, within AO353_25530 at 5631.872 kb on + strand, within AO353_25530 at 5631.873 kb on - strand, within AO353_25530 at 5632.157 kb on + strand, within AO353_25530 at 5632.157 kb on + strand, within AO353_25530 at 5632.157 kb on + strand, within AO353_25530 at 5632.157 kb on + strand, within AO353_25530 at 5632.158 kb on - strand, within AO353_25530 at 5632.251 kb on - strand, within AO353_25530 at 5632.330 kb on + strand, within AO353_25530 at 5632.330 kb on + strand, within AO353_25530 at 5632.332 kb on + strand, within AO353_25530 at 5632.332 kb on + strand, within AO353_25530 at 5632.332 kb on + strand, within AO353_25530 at 5632.445 kb on + strand, within AO353_25530 at 5632.445 kb on + strand, within AO353_25530 at 5632.445 kb on + strand, within AO353_25530 at 5632.445 kb on + strand, within AO353_25530 at 5632.445 kb on + strand, within AO353_25530 at 5632.448 kb on + strand, within AO353_25530 at 5632.611 kb on + strand at 5633.535 kb on + strand at 5633.535 kb on + strand at 5633.535 kb on + strand at 5633.535 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.15 mg/ml remove 5,631,744 + AO353_25530 0.26 -2.0 5,631,745 - AO353_25530 0.26 -2.0 5,631,840 - AO353_25530 0.34 -1.6 5,631,872 + AO353_25530 0.37 -1.4 5,631,873 - AO353_25530 0.37 -3.0 5,632,157 + AO353_25530 0.62 -1.1 5,632,157 + AO353_25530 0.62 +0.0 5,632,157 + AO353_25530 0.62 +0.0 5,632,157 + AO353_25530 0.62 -1.8 5,632,158 - AO353_25530 0.62 -1.4 5,632,251 - AO353_25530 0.70 -1.1 5,632,330 + AO353_25530 0.77 -1.6 5,632,330 + AO353_25530 0.77 +0.0 5,632,332 + AO353_25530 0.77 -0.1 5,632,332 + AO353_25530 0.77 +0.4 5,632,332 + AO353_25530 0.77 -0.2 5,632,445 + AO353_25530 0.87 -1.6 5,632,445 + AO353_25530 0.87 -0.3 5,632,445 + AO353_25530 0.87 -0.1 5,632,445 + AO353_25530 0.87 -0.5 5,632,445 + AO353_25530 0.87 +1.6 5,632,448 + AO353_25530 0.88 -0.0 5,632,611 + +0.2 5,633,535 + +1.0 5,633,535 + -2.4 5,633,535 + -0.5 5,633,535 + -0.8
Or see this region's nucleotide sequence