Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23880

Experiment: Spectinomycin 0.15 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23870 and AO353_23875 are separated by 51 nucleotidesAO353_23875 and AO353_23880 are separated by 124 nucleotidesAO353_23880 and AO353_23885 are separated by 10 nucleotides AO353_23870: AO353_23870 - DNA-binding protein, at 5,238,703 to 5,239,419 _23870 AO353_23875: AO353_23875 - ketosteroid isomerase, at 5,239,471 to 5,239,812 _23875 AO353_23880: AO353_23880 - ATPase, at 5,239,937 to 5,241,055 _23880 AO353_23885: AO353_23885 - AraC family transcriptional regulator, at 5,241,066 to 5,241,971 _23885 Position (kb) 5239 5240 5241 5242Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5238.958 kb on + strand, within AO353_23870at 5238.958 kb on + strand, within AO353_23870at 5239.124 kb on + strand, within AO353_23870at 5239.124 kb on + strand, within AO353_23870at 5239.125 kb on - strand, within AO353_23870at 5239.433 kb on + strandat 5239.433 kb on + strandat 5239.433 kb on + strandat 5239.433 kb on + strandat 5239.434 kb on - strandat 5239.434 kb on - strandat 5239.434 kb on - strandat 5239.468 kb on - strandat 5239.513 kb on + strand, within AO353_23875at 5239.513 kb on + strand, within AO353_23875at 5239.513 kb on + strand, within AO353_23875at 5239.514 kb on - strand, within AO353_23875at 5239.514 kb on - strand, within AO353_23875at 5239.514 kb on - strand, within AO353_23875at 5239.514 kb on - strand, within AO353_23875at 5239.515 kb on + strand, within AO353_23875at 5239.515 kb on + strand, within AO353_23875at 5239.515 kb on + strand, within AO353_23875at 5239.515 kb on + strand, within AO353_23875at 5239.700 kb on + strand, within AO353_23875at 5239.700 kb on + strand, within AO353_23875at 5239.701 kb on - strand, within AO353_23875at 5239.701 kb on - strand, within AO353_23875at 5239.757 kb on - strand, within AO353_23875at 5239.903 kb on + strandat 5239.903 kb on + strandat 5239.904 kb on - strandat 5239.904 kb on - strandat 5239.904 kb on - strandat 5239.965 kb on - strandat 5240.085 kb on - strand, within AO353_23880at 5240.628 kb on - strandat 5240.665 kb on - strand, within AO353_23880at 5240.862 kb on + strand, within AO353_23880at 5240.862 kb on + strand, within AO353_23880at 5240.915 kb on + strand, within AO353_23880at 5240.916 kb on - strand, within AO353_23880at 5240.936 kb on + strand, within AO353_23880at 5240.969 kb on + strandat 5240.969 kb on + strandat 5240.969 kb on + strandat 5240.970 kb on - strandat 5240.970 kb on - strandat 5240.970 kb on - strandat 5240.970 kb on - strandat 5240.970 kb on - strandat 5240.970 kb on - strandat 5240.970 kb on - strandat 5240.981 kb on + strandat 5241.033 kb on + strandat 5241.034 kb on - strandat 5241.034 kb on - strandat 5241.034 kb on - strandat 5241.063 kb on - strandat 5241.167 kb on + strand, within AO353_23885at 5241.167 kb on + strand, within AO353_23885at 5241.167 kb on + strand, within AO353_23885at 5241.167 kb on + strandat 5241.167 kb on + strand, within AO353_23885at 5241.168 kb on - strand, within AO353_23885at 5241.168 kb on - strand, within AO353_23885at 5241.210 kb on - strand, within AO353_23885at 5241.310 kb on + strand, within AO353_23885at 5241.311 kb on - strand, within AO353_23885at 5241.311 kb on - strand, within AO353_23885at 5241.311 kb on - strand, within AO353_23885at 5241.311 kb on - strand, within AO353_23885at 5241.382 kb on + strand, within AO353_23885at 5241.382 kb on + strand, within AO353_23885at 5241.382 kb on + strand, within AO353_23885at 5241.383 kb on - strand, within AO353_23885at 5241.576 kb on - strand, within AO353_23885at 5241.576 kb on - strand, within AO353_23885at 5241.595 kb on + strand, within AO353_23885at 5241.793 kb on + strand, within AO353_23885at 5241.794 kb on - strandat 5241.794 kb on - strand, within AO353_23885at 5241.937 kb on + strandat 5241.938 kb on - strandat 5241.989 kb on + strandat 5241.990 kb on - strandat 5241.990 kb on - strandat 5241.990 kb on - strandat 5242.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.15 mg/ml
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5,238,958 + AO353_23870 0.36 +0.6
5,238,958 + AO353_23870 0.36 +0.9
5,239,124 + AO353_23870 0.59 +0.5
5,239,124 + AO353_23870 0.59 -1.0
5,239,125 - AO353_23870 0.59 -0.6
5,239,433 + +1.8
5,239,433 + +2.0
5,239,433 + -2.7
5,239,433 + -0.1
5,239,434 - +0.7
5,239,434 - +0.1
5,239,434 - +0.6
5,239,468 - -0.8
5,239,513 + AO353_23875 0.12 -1.1
5,239,513 + AO353_23875 0.12 +0.0
5,239,513 + AO353_23875 0.12 -2.5
5,239,514 - AO353_23875 0.13 +0.2
5,239,514 - AO353_23875 0.13 -0.9
5,239,514 - AO353_23875 0.13 -2.9
5,239,514 - AO353_23875 0.13 -1.0
5,239,515 + AO353_23875 0.13 -1.8
5,239,515 + AO353_23875 0.13 -1.1
5,239,515 + AO353_23875 0.13 +0.7
5,239,515 + AO353_23875 0.13 -0.2
5,239,700 + AO353_23875 0.67 -2.8
5,239,700 + AO353_23875 0.67 +0.8
5,239,701 - AO353_23875 0.67 +0.5
5,239,701 - AO353_23875 0.67 -0.9
5,239,757 - AO353_23875 0.84 +2.2
5,239,903 + -0.0
5,239,903 + +0.5
5,239,904 - -0.8
5,239,904 - -0.8
5,239,904 - -1.1
5,239,965 - +1.2
5,240,085 - AO353_23880 0.13 -1.8
5,240,628 - -0.4
5,240,665 - AO353_23880 0.65 -0.6
5,240,862 + AO353_23880 0.83 -2.5
5,240,862 + AO353_23880 0.83 +0.7
5,240,915 + AO353_23880 0.87 -0.8
5,240,916 - AO353_23880 0.87 -1.4
5,240,936 + AO353_23880 0.89 -0.4
5,240,969 + +0.2
5,240,969 + -1.1
5,240,969 + -1.6
5,240,970 - -0.5
5,240,970 - +0.8
5,240,970 - +0.5
5,240,970 - -1.2
5,240,970 - +0.5
5,240,970 - +0.2
5,240,970 - +0.9
5,240,981 + +0.5
5,241,033 + -0.6
5,241,034 - +0.2
5,241,034 - -0.8
5,241,034 - +0.8
5,241,063 - -1.4
5,241,167 + AO353_23885 0.11 -1.4
5,241,167 + AO353_23885 0.11 -0.3
5,241,167 + AO353_23885 0.11 -0.9
5,241,167 + +0.2
5,241,167 + AO353_23885 0.11 -0.8
5,241,168 - AO353_23885 0.11 -0.4
5,241,168 - AO353_23885 0.11 -0.4
5,241,210 - AO353_23885 0.16 +0.4
5,241,310 + AO353_23885 0.27 +0.5
5,241,311 - AO353_23885 0.27 +1.2
5,241,311 - AO353_23885 0.27 -0.1
5,241,311 - AO353_23885 0.27 -0.8
5,241,311 - AO353_23885 0.27 +1.2
5,241,382 + AO353_23885 0.35 +0.5
5,241,382 + AO353_23885 0.35 -1.1
5,241,382 + AO353_23885 0.35 -0.1
5,241,383 - AO353_23885 0.35 +1.4
5,241,576 - AO353_23885 0.56 -0.4
5,241,576 - AO353_23885 0.56 -0.5
5,241,595 + AO353_23885 0.58 -0.6
5,241,793 + AO353_23885 0.80 -0.3
5,241,794 - +1.2
5,241,794 - AO353_23885 0.80 -0.1
5,241,937 + -0.1
5,241,938 - -2.5
5,241,989 + -0.4
5,241,990 - -1.4
5,241,990 - +0.4
5,241,990 - -0.4
5,242,040 - +1.2

Or see this region's nucleotide sequence