Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08455

Experiment: Spectinomycin 0.15 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08445 and AO353_08450 are separated by 63 nucleotidesAO353_08450 and AO353_08455 are separated by 97 nucleotidesAO353_08455 and AO353_08460 are separated by 121 nucleotides AO353_08445: AO353_08445 - thymidylate synthase, at 1,856,855 to 1,857,826 _08445 AO353_08450: AO353_08450 - prolipoprotein diacylglyceryl transferase, at 1,857,890 to 1,858,705 _08450 AO353_08455: AO353_08455 - hypothetical protein, at 1,858,803 to 1,859,585 _08455 AO353_08460: AO353_08460 - hypothetical protein, at 1,859,707 to 1,860,453 _08460 Position (kb) 1858 1859 1860Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1857.832 kb on - strandat 1857.832 kb on - strandat 1857.832 kb on - strandat 1857.832 kb on - strandat 1857.832 kb on - strandat 1857.832 kb on - strandat 1857.832 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.892 kb on - strandat 1857.892 kb on - strandat 1857.892 kb on - strandat 1857.892 kb on - strandat 1857.931 kb on - strandat 1858.720 kb on - strandat 1858.733 kb on - strandat 1858.944 kb on + strand, within AO353_08455at 1858.945 kb on - strand, within AO353_08455at 1858.948 kb on + strand, within AO353_08455at 1858.948 kb on + strand, within AO353_08455at 1858.949 kb on - strand, within AO353_08455at 1858.949 kb on - strand, within AO353_08455at 1858.949 kb on - strand, within AO353_08455at 1858.949 kb on - strand, within AO353_08455at 1858.949 kb on - strand, within AO353_08455at 1858.949 kb on - strand, within AO353_08455at 1858.949 kb on - strand, within AO353_08455at 1858.949 kb on - strand, within AO353_08455at 1858.949 kb on - strand, within AO353_08455at 1858.964 kb on + strand, within AO353_08455at 1858.964 kb on + strand, within AO353_08455at 1858.964 kb on + strand, within AO353_08455at 1858.964 kb on + strand, within AO353_08455at 1858.964 kb on + strand, within AO353_08455at 1858.964 kb on + strand, within AO353_08455at 1858.964 kb on + strand, within AO353_08455at 1858.965 kb on - strand, within AO353_08455at 1858.965 kb on - strand, within AO353_08455at 1858.965 kb on - strand, within AO353_08455at 1859.010 kb on + strand, within AO353_08455at 1859.010 kb on + strand, within AO353_08455at 1859.010 kb on + strand, within AO353_08455at 1859.010 kb on + strand, within AO353_08455at 1859.010 kb on + strand, within AO353_08455at 1859.010 kb on + strand, within AO353_08455at 1859.010 kb on + strand, within AO353_08455at 1859.011 kb on - strand, within AO353_08455at 1859.011 kb on - strand, within AO353_08455at 1859.011 kb on - strand, within AO353_08455at 1859.181 kb on - strand, within AO353_08455at 1859.181 kb on - strand, within AO353_08455at 1859.569 kb on + strandat 1859.569 kb on + strandat 1859.569 kb on + strandat 1859.569 kb on + strandat 1859.570 kb on - strandat 1859.570 kb on - strandat 1859.570 kb on - strandat 1859.570 kb on - strandat 1859.570 kb on - strandat 1859.570 kb on - strandat 1859.600 kb on + strandat 1859.600 kb on + strandat 1859.600 kb on + strandat 1859.600 kb on + strandat 1859.600 kb on + strandat 1859.600 kb on + strandat 1859.600 kb on + strandat 1859.600 kb on + strandat 1859.600 kb on + strandat 1859.601 kb on - strandat 1859.601 kb on - strandat 1859.601 kb on - strandat 1859.601 kb on - strandat 1859.601 kb on - strandat 1859.601 kb on - strandat 1859.601 kb on - strandat 1859.601 kb on - strandat 1859.601 kb on - strandat 1859.668 kb on + strandat 1859.668 kb on + strandat 1859.674 kb on + strandat 1859.674 kb on + strandat 1859.674 kb on + strandat 1859.782 kb on + strand, within AO353_08460at 1859.782 kb on + strand, within AO353_08460at 1859.782 kb on + strand, within AO353_08460at 1859.782 kb on + strand, within AO353_08460at 1859.782 kb on + strand, within AO353_08460at 1859.783 kb on - strand, within AO353_08460at 1859.783 kb on - strand, within AO353_08460at 1859.783 kb on - strand, within AO353_08460at 1859.783 kb on - strand, within AO353_08460at 1859.833 kb on + strand, within AO353_08460at 1859.833 kb on + strand, within AO353_08460at 1859.833 kb on + strand, within AO353_08460at 1859.834 kb on - strand, within AO353_08460at 1859.834 kb on - strand, within AO353_08460at 1859.834 kb on - strand, within AO353_08460at 1859.998 kb on + strand, within AO353_08460at 1859.998 kb on + strand, within AO353_08460at 1859.998 kb on + strand, within AO353_08460at 1859.998 kb on + strand, within AO353_08460at 1859.998 kb on + strand, within AO353_08460at 1859.998 kb on + strand, within AO353_08460at 1859.999 kb on - strand, within AO353_08460at 1859.999 kb on - strand, within AO353_08460at 1859.999 kb on - strand, within AO353_08460at 1859.999 kb on - strand, within AO353_08460at 1860.031 kb on + strand, within AO353_08460at 1860.031 kb on + strand, within AO353_08460at 1860.031 kb on + strand, within AO353_08460at 1860.032 kb on - strand, within AO353_08460at 1860.032 kb on - strand, within AO353_08460at 1860.032 kb on - strand, within AO353_08460at 1860.032 kb on - strand, within AO353_08460at 1860.043 kb on - strand, within AO353_08460at 1860.079 kb on + strand, within AO353_08460at 1860.080 kb on - strand, within AO353_08460at 1860.080 kb on - strand, within AO353_08460at 1860.080 kb on - strand, within AO353_08460at 1860.080 kb on - strand, within AO353_08460at 1860.080 kb on - strand, within AO353_08460at 1860.124 kb on + strand, within AO353_08460at 1860.124 kb on + strand, within AO353_08460at 1860.124 kb on + strand, within AO353_08460at 1860.124 kb on + strand, within AO353_08460at 1860.124 kb on + strand, within AO353_08460at 1860.124 kb on + strand, within AO353_08460at 1860.124 kb on + strand, within AO353_08460at 1860.124 kb on + strand, within AO353_08460at 1860.124 kb on + strand, within AO353_08460at 1860.124 kb on + strand, within AO353_08460at 1860.124 kb on + strand, within AO353_08460at 1860.124 kb on + strand, within AO353_08460at 1860.125 kb on - strand, within AO353_08460at 1860.125 kb on - strand, within AO353_08460at 1860.125 kb on - strand, within AO353_08460at 1860.125 kb on - strand, within AO353_08460at 1860.125 kb on - strand, within AO353_08460at 1860.125 kb on - strand, within AO353_08460at 1860.125 kb on - strand, within AO353_08460at 1860.125 kb on - strand, within AO353_08460at 1860.125 kb on - strand, within AO353_08460at 1860.125 kb on - strand, within AO353_08460at 1860.224 kb on + strand, within AO353_08460at 1860.224 kb on + strand, within AO353_08460at 1860.236 kb on + strand, within AO353_08460at 1860.236 kb on + strand, within AO353_08460at 1860.237 kb on - strand, within AO353_08460at 1860.305 kb on + strand, within AO353_08460at 1860.305 kb on + strand, within AO353_08460at 1860.305 kb on + strand, within AO353_08460at 1860.306 kb on - strand, within AO353_08460at 1860.306 kb on - strand, within AO353_08460at 1860.306 kb on - strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.337 kb on + strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.338 kb on - strand, within AO353_08460at 1860.365 kb on + strand, within AO353_08460at 1860.365 kb on + strand, within AO353_08460at 1860.366 kb on - strand, within AO353_08460at 1860.390 kb on + strandat 1860.390 kb on + strandat 1860.390 kb on + strandat 1860.390 kb on + strandat 1860.390 kb on + strandat 1860.390 kb on + strandat 1860.390 kb on + strandat 1860.391 kb on - strandat 1860.451 kb on + strandat 1860.538 kb on + strandat 1860.538 kb on + strandat 1860.538 kb on + strandat 1860.538 kb on + strandat 1860.538 kb on + strandat 1860.539 kb on - strandat 1860.539 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.15 mg/ml
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1,857,832 - -0.2
1,857,832 - -0.1
1,857,832 - +0.9
1,857,832 - -0.9
1,857,832 - +0.0
1,857,832 - -0.6
1,857,832 - +0.5
1,857,877 - -2.3
1,857,877 - -1.2
1,857,877 - -1.4
1,857,877 - +1.2
1,857,877 - +1.0
1,857,877 - +0.3
1,857,877 - +1.6
1,857,877 - +1.2
1,857,877 - +1.0
1,857,892 - +0.5
1,857,892 - +0.1
1,857,892 - -0.6
1,857,892 - -0.3
1,857,931 - -0.2
1,858,720 - +0.6
1,858,733 - +1.7
1,858,944 + AO353_08455 0.18 +0.4
1,858,945 - AO353_08455 0.18 -0.4
1,858,948 + AO353_08455 0.19 -0.2
1,858,948 + AO353_08455 0.19 +0.7
1,858,949 - AO353_08455 0.19 -2.3
1,858,949 - AO353_08455 0.19 -2.2
1,858,949 - AO353_08455 0.19 -0.2
1,858,949 - AO353_08455 0.19 -0.1
1,858,949 - AO353_08455 0.19 -1.4
1,858,949 - AO353_08455 0.19 -0.5
1,858,949 - AO353_08455 0.19 -0.6
1,858,949 - AO353_08455 0.19 -0.2
1,858,949 - AO353_08455 0.19 +0.1
1,858,964 + AO353_08455 0.21 -2.5
1,858,964 + AO353_08455 0.21 +0.8
1,858,964 + AO353_08455 0.21 -1.6
1,858,964 + AO353_08455 0.21 -2.0
1,858,964 + AO353_08455 0.21 -0.9
1,858,964 + AO353_08455 0.21 +0.4
1,858,964 + AO353_08455 0.21 -1.2
1,858,965 - AO353_08455 0.21 -1.0
1,858,965 - AO353_08455 0.21 -1.0
1,858,965 - AO353_08455 0.21 -2.3
1,859,010 + AO353_08455 0.26 -0.8
1,859,010 + AO353_08455 0.26 -0.2
1,859,010 + AO353_08455 0.26 -1.0
1,859,010 + AO353_08455 0.26 -1.0
1,859,010 + AO353_08455 0.26 -0.9
1,859,010 + AO353_08455 0.26 -1.3
1,859,010 + AO353_08455 0.26 -0.8
1,859,011 - AO353_08455 0.27 -0.3
1,859,011 - AO353_08455 0.27 -0.4
1,859,011 - AO353_08455 0.27 +0.2
1,859,181 - AO353_08455 0.48 +0.1
1,859,181 - AO353_08455 0.48 -0.7
1,859,569 + +0.4
1,859,569 + +0.1
1,859,569 + +0.1
1,859,569 + +0.0
1,859,570 - -0.5
1,859,570 - +0.1
1,859,570 - -0.2
1,859,570 - +0.2
1,859,570 - -0.6
1,859,570 - +0.5
1,859,600 + -1.2
1,859,600 + -1.1
1,859,600 + +2.1
1,859,600 + +0.2
1,859,600 + +0.9
1,859,600 + +0.1
1,859,600 + +0.5
1,859,600 + -0.3
1,859,600 + -0.8
1,859,601 - +1.1
1,859,601 - -0.6
1,859,601 - +1.3
1,859,601 - -1.1
1,859,601 - -2.1
1,859,601 - +0.0
1,859,601 - -0.5
1,859,601 - -1.4
1,859,601 - -0.5
1,859,668 + +0.5
1,859,668 + -1.1
1,859,674 + -0.7
1,859,674 + -1.3
1,859,674 + +1.3
1,859,782 + AO353_08460 0.10 +0.9
1,859,782 + AO353_08460 0.10 -0.2
1,859,782 + AO353_08460 0.10 +0.1
1,859,782 + AO353_08460 0.10 +0.9
1,859,782 + AO353_08460 0.10 +0.7
1,859,783 - AO353_08460 0.10 +0.5
1,859,783 - AO353_08460 0.10 -0.1
1,859,783 - AO353_08460 0.10 -1.1
1,859,783 - AO353_08460 0.10 -2.4
1,859,833 + AO353_08460 0.17 -0.4
1,859,833 + AO353_08460 0.17 -0.1
1,859,833 + AO353_08460 0.17 +0.4
1,859,834 - AO353_08460 0.17 +0.9
1,859,834 - AO353_08460 0.17 +0.6
1,859,834 - AO353_08460 0.17 -0.9
1,859,998 + AO353_08460 0.39 -1.2
1,859,998 + AO353_08460 0.39 -0.3
1,859,998 + AO353_08460 0.39 +0.8
1,859,998 + AO353_08460 0.39 +0.5
1,859,998 + AO353_08460 0.39 -0.3
1,859,998 + AO353_08460 0.39 +0.1
1,859,999 - AO353_08460 0.39 +0.2
1,859,999 - AO353_08460 0.39 +0.5
1,859,999 - AO353_08460 0.39 -0.3
1,859,999 - AO353_08460 0.39 +0.9
1,860,031 + AO353_08460 0.43 +0.9
1,860,031 + AO353_08460 0.43 +0.8
1,860,031 + AO353_08460 0.43 -0.9
1,860,032 - AO353_08460 0.44 -1.5
1,860,032 - AO353_08460 0.44 +0.2
1,860,032 - AO353_08460 0.44 +1.3
1,860,032 - AO353_08460 0.44 -0.6
1,860,043 - AO353_08460 0.45 +0.9
1,860,079 + AO353_08460 0.50 +1.2
1,860,080 - AO353_08460 0.50 -0.9
1,860,080 - AO353_08460 0.50 +0.8
1,860,080 - AO353_08460 0.50 -1.2
1,860,080 - AO353_08460 0.50 +1.4
1,860,080 - AO353_08460 0.50 +0.8
1,860,124 + AO353_08460 0.56 -0.1
1,860,124 + AO353_08460 0.56 +2.1
1,860,124 + AO353_08460 0.56 +1.4
1,860,124 + AO353_08460 0.56 +0.5
1,860,124 + AO353_08460 0.56 -0.1
1,860,124 + AO353_08460 0.56 -0.2
1,860,124 + AO353_08460 0.56 +0.9
1,860,124 + AO353_08460 0.56 -0.2
1,860,124 + AO353_08460 0.56 +0.0
1,860,124 + AO353_08460 0.56 +0.4
1,860,124 + AO353_08460 0.56 -0.2
1,860,124 + AO353_08460 0.56 -0.1
1,860,125 - AO353_08460 0.56 +0.1
1,860,125 - AO353_08460 0.56 -0.1
1,860,125 - AO353_08460 0.56 -0.1
1,860,125 - AO353_08460 0.56 -0.3
1,860,125 - AO353_08460 0.56 -0.5
1,860,125 - AO353_08460 0.56 -1.1
1,860,125 - AO353_08460 0.56 -1.6
1,860,125 - AO353_08460 0.56 -2.1
1,860,125 - AO353_08460 0.56 +1.4
1,860,125 - AO353_08460 0.56 -0.5
1,860,224 + AO353_08460 0.69 +1.1
1,860,224 + AO353_08460 0.69 -0.6
1,860,236 + AO353_08460 0.71 +0.6
1,860,236 + AO353_08460 0.71 +0.7
1,860,237 - AO353_08460 0.71 -0.9
1,860,305 + AO353_08460 0.80 -1.1
1,860,305 + AO353_08460 0.80 -2.0
1,860,305 + AO353_08460 0.80 -0.9
1,860,306 - AO353_08460 0.80 -0.2
1,860,306 - AO353_08460 0.80 +0.5
1,860,306 - AO353_08460 0.80 +0.5
1,860,337 + AO353_08460 0.84 +0.4
1,860,337 + AO353_08460 0.84 +0.3
1,860,337 + AO353_08460 0.84 +0.5
1,860,337 + AO353_08460 0.84 +1.1
1,860,337 + AO353_08460 0.84 -0.2
1,860,337 + AO353_08460 0.84 +0.7
1,860,337 + AO353_08460 0.84 +1.1
1,860,337 + AO353_08460 0.84 -1.1
1,860,337 + AO353_08460 0.84 -0.2
1,860,337 + AO353_08460 0.84 +1.0
1,860,337 + AO353_08460 0.84 +1.1
1,860,337 + AO353_08460 0.84 +0.7
1,860,337 + AO353_08460 0.84 +0.7
1,860,337 + AO353_08460 0.84 +1.0
1,860,337 + AO353_08460 0.84 -0.0
1,860,337 + AO353_08460 0.84 +0.2
1,860,337 + AO353_08460 0.84 +0.1
1,860,337 + AO353_08460 0.84 +1.0
1,860,337 + AO353_08460 0.84 +0.5
1,860,337 + AO353_08460 0.84 -0.7
1,860,337 + AO353_08460 0.84 +0.0
1,860,337 + AO353_08460 0.84 +0.9
1,860,338 - AO353_08460 0.84 -1.0
1,860,338 - AO353_08460 0.84 +0.8
1,860,338 - AO353_08460 0.84 +0.1
1,860,338 - AO353_08460 0.84 -0.9
1,860,338 - AO353_08460 0.84 -1.3
1,860,338 - AO353_08460 0.84 +0.3
1,860,338 - AO353_08460 0.84 +0.4
1,860,338 - AO353_08460 0.84 -0.2
1,860,338 - AO353_08460 0.84 +0.3
1,860,338 - AO353_08460 0.84 -0.1
1,860,338 - AO353_08460 0.84 +0.0
1,860,338 - AO353_08460 0.84 +0.3
1,860,338 - AO353_08460 0.84 +0.5
1,860,338 - AO353_08460 0.84 -0.3
1,860,338 - AO353_08460 0.84 +1.5
1,860,338 - AO353_08460 0.84 +0.1
1,860,338 - AO353_08460 0.84 -1.2
1,860,338 - AO353_08460 0.84 -0.9
1,860,338 - AO353_08460 0.84 +0.6
1,860,338 - AO353_08460 0.84 +0.3
1,860,338 - AO353_08460 0.84 -1.2
1,860,338 - AO353_08460 0.84 -1.8
1,860,338 - AO353_08460 0.84 -0.6
1,860,338 - AO353_08460 0.84 -0.5
1,860,338 - AO353_08460 0.84 -0.9
1,860,365 + AO353_08460 0.88 +1.0
1,860,365 + AO353_08460 0.88 +0.8
1,860,366 - AO353_08460 0.88 +0.2
1,860,390 + +0.1
1,860,390 + +0.8
1,860,390 + -0.5
1,860,390 + +0.7
1,860,390 + +0.0
1,860,390 + -0.5
1,860,390 + -0.1
1,860,391 - -2.3
1,860,451 + -0.2
1,860,538 + +0.5
1,860,538 + -0.4
1,860,538 + -0.5
1,860,538 + +2.9
1,860,538 + -0.6
1,860,539 - -1.1
1,860,539 - -0.2

Or see this region's nucleotide sequence