Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS13675 and ABZR86_RS13680 are separated by 8 nucleotides ABZR86_RS13680 and ABZR86_RS13685 are separated by 7 nucleotides ABZR86_RS13685 and ABZR86_RS13690 overlap by 4 nucleotides
ABZR86_RS13675: ABZR86_RS13675 - LysM domain-containing protein, at 3,056,134 to 3,057,501
_RS13675
ABZR86_RS13680: ABZR86_RS13680 - type III secretion HpaP family protein, at 3,057,510 to 3,058,220
_RS13680
ABZR86_RS13685: ABZR86_RS13685 - hypothetical protein, at 3,058,228 to 3,058,716
_RS13685
ABZR86_RS13690: ABZR86_RS13690 - FliI/YscN family ATPase, at 3,058,713 to 3,060,062
_RS13690
Position (kb)
3057
3058
3059 Strain fitness (log2 ratio)
-1
0
1 at 3057.927 kb on - strand, within ABZR86_RS13680 at 3058.163 kb on + strand at 3058.163 kb on + strand at 3058.163 kb on + strand at 3058.169 kb on + strand at 3058.169 kb on + strand at 3058.169 kb on + strand at 3058.170 kb on - strand at 3058.170 kb on - strand at 3058.221 kb on - strand at 3058.221 kb on - strand at 3058.885 kb on + strand, within ABZR86_RS13690 at 3058.897 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.027 kb on + strand, within ABZR86_RS13690 at 3059.027 kb on + strand, within ABZR86_RS13690 at 3059.027 kb on + strand, within ABZR86_RS13690 at 3059.027 kb on + strand, within ABZR86_RS13690 at 3059.028 kb on - strand, within ABZR86_RS13690 at 3059.028 kb on - strand, within ABZR86_RS13690 at 3059.028 kb on - strand, within ABZR86_RS13690 at 3059.028 kb on - strand, within ABZR86_RS13690 at 3059.101 kb on + strand, within ABZR86_RS13690 at 3059.102 kb on - strand, within ABZR86_RS13690 at 3059.102 kb on - strand, within ABZR86_RS13690
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 3,057,927 - ABZR86_RS13680 0.59 -0.5 3,058,163 + -0.7 3,058,163 + -0.6 3,058,163 + +0.8 3,058,169 + -0.7 3,058,169 + -0.0 3,058,169 + -0.1 3,058,170 - -0.4 3,058,170 - -0.4 3,058,221 - -0.3 3,058,221 - -0.6 3,058,885 + ABZR86_RS13690 0.13 +1.4 3,058,897 + ABZR86_RS13690 0.14 +1.4 3,059,023 + ABZR86_RS13690 0.23 -0.3 3,059,023 + ABZR86_RS13690 0.23 -0.5 3,059,023 + ABZR86_RS13690 0.23 -0.2 3,059,023 + ABZR86_RS13690 0.23 +0.5 3,059,023 + ABZR86_RS13690 0.23 +0.4 3,059,023 + ABZR86_RS13690 0.23 +0.0 3,059,023 + ABZR86_RS13690 0.23 +0.4 3,059,024 - ABZR86_RS13690 0.23 +0.2 3,059,024 - ABZR86_RS13690 0.23 -0.6 3,059,024 - ABZR86_RS13690 0.23 -0.2 3,059,024 - ABZR86_RS13690 0.23 +0.7 3,059,024 - ABZR86_RS13690 0.23 -0.4 3,059,024 - ABZR86_RS13690 0.23 +0.6 3,059,024 - ABZR86_RS13690 0.23 -0.3 3,059,024 - ABZR86_RS13690 0.23 -0.4 3,059,024 - ABZR86_RS13690 0.23 -0.3 3,059,027 + ABZR86_RS13690 0.23 -0.0 3,059,027 + ABZR86_RS13690 0.23 +0.1 3,059,027 + ABZR86_RS13690 0.23 -0.2 3,059,027 + ABZR86_RS13690 0.23 +0.9 3,059,028 - ABZR86_RS13690 0.23 -0.3 3,059,028 - ABZR86_RS13690 0.23 -0.3 3,059,028 - ABZR86_RS13690 0.23 -0.5 3,059,028 - ABZR86_RS13690 0.23 +0.7 3,059,101 + ABZR86_RS13690 0.29 +0.3 3,059,102 - ABZR86_RS13690 0.29 -0.5 3,059,102 - ABZR86_RS13690 0.29 -0.4
Or see this region's nucleotide sequence