Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS07895

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS07885 and ABZR86_RS07890 are separated by 49 nucleotidesABZR86_RS07890 and ABZR86_RS07895 are separated by 124 nucleotidesABZR86_RS07895 and ABZR86_RS07900 are separated by 104 nucleotidesABZR86_RS07900 and ABZR86_RS07905 are separated by 48 nucleotidesABZR86_RS07905 and ABZR86_RS07910 are separated by 15 nucleotides ABZR86_RS07885: ABZR86_RS07885 - cation diffusion facilitator family transporter, at 1,752,782 to 1,753,765 _RS07885 ABZR86_RS07890: ABZR86_RS07890 - MerC domain-containing protein, at 1,753,815 to 1,754,237 _RS07890 ABZR86_RS07895: ABZR86_RS07895 - TonB-dependent receptor, at 1,754,362 to 1,756,362 _RS07895 ABZR86_RS07900: ABZR86_RS07900 - transcriptional repressor, at 1,756,467 to 1,756,949 _RS07900 ABZR86_RS07905: ABZR86_RS07905 - hypothetical protein, at 1,756,998 to 1,757,276 _RS07905 ABZR86_RS07910: ABZR86_RS07910 - glutamate--tRNA ligase, at 1,757,292 to 1,758,692 _RS07910 Position (kb) 1754 1755 1756 1757Strain fitness (log2 ratio) -2 -1 0 1 2at 1753.467 kb on + strand, within ABZR86_RS07885at 1753.467 kb on + strand, within ABZR86_RS07885at 1753.467 kb on + strand, within ABZR86_RS07885at 1753.467 kb on + strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.776 kb on + strandat 1753.777 kb on - strandat 1753.777 kb on - strandat 1753.777 kb on - strandat 1753.940 kb on - strand, within ABZR86_RS07890at 1754.250 kb on - strandat 1754.340 kb on + strandat 1754.341 kb on - strandat 1755.025 kb on + strand, within ABZR86_RS07895at 1755.025 kb on + strand, within ABZR86_RS07895at 1755.025 kb on + strand, within ABZR86_RS07895at 1755.025 kb on + strand, within ABZR86_RS07895at 1755.113 kb on - strand, within ABZR86_RS07895at 1755.136 kb on + strand, within ABZR86_RS07895at 1755.148 kb on + strand, within ABZR86_RS07895at 1755.149 kb on - strand, within ABZR86_RS07895at 1755.223 kb on + strand, within ABZR86_RS07895at 1755.224 kb on - strand, within ABZR86_RS07895at 1755.298 kb on + strand, within ABZR86_RS07895at 1755.299 kb on - strand, within ABZR86_RS07895at 1755.313 kb on + strand, within ABZR86_RS07895at 1755.313 kb on + strand, within ABZR86_RS07895at 1755.314 kb on - strand, within ABZR86_RS07895at 1755.421 kb on + strand, within ABZR86_RS07895at 1755.422 kb on - strand, within ABZR86_RS07895at 1755.422 kb on - strand, within ABZR86_RS07895at 1755.422 kb on - strand, within ABZR86_RS07895at 1755.422 kb on - strand, within ABZR86_RS07895at 1755.800 kb on - strand, within ABZR86_RS07895at 1755.800 kb on - strand, within ABZR86_RS07895at 1755.835 kb on + strand, within ABZR86_RS07895at 1755.836 kb on - strand, within ABZR86_RS07895at 1755.862 kb on + strand, within ABZR86_RS07895at 1755.862 kb on + strand, within ABZR86_RS07895at 1755.863 kb on - strand, within ABZR86_RS07895at 1756.133 kb on - strand, within ABZR86_RS07895at 1756.360 kb on + strandat 1756.360 kb on + strandat 1756.360 kb on + strandat 1756.360 kb on + strandat 1756.360 kb on + strandat 1756.360 kb on + strandat 1756.361 kb on - strandat 1756.361 kb on - strandat 1756.361 kb on - strandat 1756.361 kb on - strandat 1756.780 kb on + strand, within ABZR86_RS07900at 1756.780 kb on + strand, within ABZR86_RS07900at 1756.781 kb on - strand, within ABZR86_RS07900at 1756.974 kb on - strandat 1756.987 kb on + strandat 1756.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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1,753,467 + ABZR86_RS07885 0.70 +0.3
1,753,467 + ABZR86_RS07885 0.70 -1.6
1,753,467 + ABZR86_RS07885 0.70 +0.0
1,753,467 + ABZR86_RS07885 0.70 +0.3
1,753,468 - ABZR86_RS07885 0.70 +0.2
1,753,468 - ABZR86_RS07885 0.70 +0.9
1,753,468 - ABZR86_RS07885 0.70 -0.6
1,753,468 - ABZR86_RS07885 0.70 -1.0
1,753,468 - ABZR86_RS07885 0.70 +0.3
1,753,468 - ABZR86_RS07885 0.70 -1.0
1,753,468 - ABZR86_RS07885 0.70 -1.6
1,753,776 + +0.1
1,753,777 - -1.1
1,753,777 - -0.1
1,753,777 - +1.9
1,753,940 - ABZR86_RS07890 0.30 +1.1
1,754,250 - -0.1
1,754,340 + -0.4
1,754,341 - -0.6
1,755,025 + ABZR86_RS07895 0.33 +0.1
1,755,025 + ABZR86_RS07895 0.33 -0.2
1,755,025 + ABZR86_RS07895 0.33 -0.1
1,755,025 + ABZR86_RS07895 0.33 +0.1
1,755,113 - ABZR86_RS07895 0.38 -0.3
1,755,136 + ABZR86_RS07895 0.39 -0.2
1,755,148 + ABZR86_RS07895 0.39 +0.1
1,755,149 - ABZR86_RS07895 0.39 +0.3
1,755,223 + ABZR86_RS07895 0.43 +0.2
1,755,224 - ABZR86_RS07895 0.43 -0.8
1,755,298 + ABZR86_RS07895 0.47 -0.0
1,755,299 - ABZR86_RS07895 0.47 +0.4
1,755,313 + ABZR86_RS07895 0.48 +0.4
1,755,313 + ABZR86_RS07895 0.48 +0.6
1,755,314 - ABZR86_RS07895 0.48 +0.7
1,755,421 + ABZR86_RS07895 0.53 -0.4
1,755,422 - ABZR86_RS07895 0.53 -0.1
1,755,422 - ABZR86_RS07895 0.53 +0.6
1,755,422 - ABZR86_RS07895 0.53 -0.5
1,755,422 - ABZR86_RS07895 0.53 -0.5
1,755,800 - ABZR86_RS07895 0.72 -0.6
1,755,800 - ABZR86_RS07895 0.72 -0.6
1,755,835 + ABZR86_RS07895 0.74 +0.7
1,755,836 - ABZR86_RS07895 0.74 +0.1
1,755,862 + ABZR86_RS07895 0.75 -0.4
1,755,862 + ABZR86_RS07895 0.75 -0.3
1,755,863 - ABZR86_RS07895 0.75 +0.2
1,756,133 - ABZR86_RS07895 0.89 -0.4
1,756,360 + -1.4
1,756,360 + -0.1
1,756,360 + +0.5
1,756,360 + +0.5
1,756,360 + -1.9
1,756,360 + +0.6
1,756,361 - -0.2
1,756,361 - +0.4
1,756,361 - +0.8
1,756,361 - +0.2
1,756,780 + ABZR86_RS07900 0.65 +1.4
1,756,780 + ABZR86_RS07900 0.65 -0.7
1,756,781 - ABZR86_RS07900 0.65 +1.0
1,756,974 - +0.0
1,756,987 + +0.7
1,756,988 - -0.3

Or see this region's nucleotide sequence