Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS07060

Experiment: L-Lysine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS07055 and ABZR86_RS07060 are separated by 83 nucleotidesABZR86_RS07060 and ABZR86_RS07065 are separated by 142 nucleotidesABZR86_RS07065 and ABZR86_RS07070 are separated by 1 nucleotides ABZR86_RS07055: ABZR86_RS07055 - acyltransferase, at 1,553,209 to 1,554,318 _RS07055 ABZR86_RS07060: ABZR86_RS07060 - ABC transporter transmembrane domain-containing protein, at 1,554,402 to 1,556,174 _RS07060 ABZR86_RS07065: ABZR86_RS07065 - copper homeostasis protein CutC, at 1,556,317 to 1,557,048 _RS07065 ABZR86_RS07070: ABZR86_RS07070 - N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase, at 1,557,050 to 1,558,075 _RS07070 Position (kb) 1554 1555 1556 1557Strain fitness (log2 ratio) -2 -1 0 1 2at 1553.431 kb on + strand, within ABZR86_RS07055at 1553.431 kb on + strand, within ABZR86_RS07055at 1553.431 kb on + strand, within ABZR86_RS07055at 1553.431 kb on + strand, within ABZR86_RS07055at 1553.431 kb on + strand, within ABZR86_RS07055at 1553.431 kb on + strand, within ABZR86_RS07055at 1553.432 kb on - strand, within ABZR86_RS07055at 1553.432 kb on - strand, within ABZR86_RS07055at 1553.485 kb on + strand, within ABZR86_RS07055at 1553.486 kb on - strand, within ABZR86_RS07055at 1553.548 kb on + strand, within ABZR86_RS07055at 1553.548 kb on + strand, within ABZR86_RS07055at 1553.548 kb on + strand, within ABZR86_RS07055at 1553.548 kb on + strand, within ABZR86_RS07055at 1553.549 kb on - strand, within ABZR86_RS07055at 1553.549 kb on - strand, within ABZR86_RS07055at 1553.549 kb on - strand, within ABZR86_RS07055at 1553.549 kb on - strand, within ABZR86_RS07055at 1553.550 kb on + strand, within ABZR86_RS07055at 1553.550 kb on + strand, within ABZR86_RS07055at 1553.550 kb on + strand, within ABZR86_RS07055at 1553.550 kb on + strand, within ABZR86_RS07055at 1553.551 kb on - strand, within ABZR86_RS07055at 1553.573 kb on - strand, within ABZR86_RS07055at 1553.629 kb on + strand, within ABZR86_RS07055at 1553.629 kb on + strand, within ABZR86_RS07055at 1553.630 kb on - strand, within ABZR86_RS07055at 1553.630 kb on - strand, within ABZR86_RS07055at 1553.630 kb on - strand, within ABZR86_RS07055at 1553.630 kb on - strand, within ABZR86_RS07055at 1553.782 kb on + strand, within ABZR86_RS07055at 1553.782 kb on + strand, within ABZR86_RS07055at 1553.782 kb on + strand, within ABZR86_RS07055at 1553.783 kb on - strand, within ABZR86_RS07055at 1553.783 kb on - strand, within ABZR86_RS07055at 1553.783 kb on - strand, within ABZR86_RS07055at 1553.783 kb on - strand, within ABZR86_RS07055at 1553.783 kb on - strand, within ABZR86_RS07055at 1553.783 kb on - strand, within ABZR86_RS07055at 1553.849 kb on - strand, within ABZR86_RS07055at 1553.849 kb on - strand, within ABZR86_RS07055at 1553.916 kb on + strand, within ABZR86_RS07055at 1553.916 kb on + strand, within ABZR86_RS07055at 1553.917 kb on - strand, within ABZR86_RS07055at 1553.917 kb on - strand, within ABZR86_RS07055at 1554.088 kb on + strand, within ABZR86_RS07055at 1554.088 kb on + strand, within ABZR86_RS07055at 1554.088 kb on + strand, within ABZR86_RS07055at 1554.088 kb on + strand, within ABZR86_RS07055at 1554.088 kb on + strand, within ABZR86_RS07055at 1554.088 kb on + strand, within ABZR86_RS07055at 1554.088 kb on + strand, within ABZR86_RS07055at 1554.089 kb on - strand, within ABZR86_RS07055at 1554.089 kb on - strand, within ABZR86_RS07055at 1554.089 kb on - strand, within ABZR86_RS07055at 1554.090 kb on + strand, within ABZR86_RS07055at 1554.090 kb on + strand, within ABZR86_RS07055at 1554.090 kb on + strand, within ABZR86_RS07055at 1554.090 kb on + strand, within ABZR86_RS07055at 1554.091 kb on - strand, within ABZR86_RS07055at 1554.091 kb on - strand, within ABZR86_RS07055at 1554.091 kb on - strand, within ABZR86_RS07055at 1554.091 kb on - strand, within ABZR86_RS07055at 1554.097 kb on + strand, within ABZR86_RS07055at 1554.097 kb on + strand, within ABZR86_RS07055at 1554.098 kb on - strand, within ABZR86_RS07055at 1554.184 kb on + strand, within ABZR86_RS07055at 1554.184 kb on + strand, within ABZR86_RS07055at 1554.185 kb on - strand, within ABZR86_RS07055at 1554.185 kb on - strand, within ABZR86_RS07055at 1554.185 kb on - strand, within ABZR86_RS07055at 1554.224 kb on - strandat 1554.672 kb on + strand, within ABZR86_RS07060at 1555.074 kb on + strand, within ABZR86_RS07060at 1555.074 kb on + strand, within ABZR86_RS07060at 1555.074 kb on + strand, within ABZR86_RS07060at 1555.075 kb on - strand, within ABZR86_RS07060at 1555.285 kb on - strand, within ABZR86_RS07060at 1555.285 kb on - strand, within ABZR86_RS07060at 1555.426 kb on + strand, within ABZR86_RS07060at 1555.426 kb on + strand, within ABZR86_RS07060at 1555.430 kb on + strand, within ABZR86_RS07060at 1555.431 kb on - strand, within ABZR86_RS07060at 1555.605 kb on + strand, within ABZR86_RS07060at 1555.605 kb on + strand, within ABZR86_RS07060at 1556.095 kb on + strandat 1556.095 kb on + strandat 1556.096 kb on - strandat 1556.139 kb on + strandat 1556.139 kb on + strandat 1556.139 kb on + strandat 1556.140 kb on - strandat 1556.203 kb on + strandat 1556.289 kb on + strandat 1556.318 kb on + strandat 1556.385 kb on + strandat 1556.721 kb on + strand, within ABZR86_RS07065at 1556.722 kb on - strand, within ABZR86_RS07065at 1556.722 kb on - strand, within ABZR86_RS07065at 1556.840 kb on + strand, within ABZR86_RS07065at 1556.840 kb on + strand, within ABZR86_RS07065at 1556.841 kb on - strand, within ABZR86_RS07065at 1556.841 kb on - strand, within ABZR86_RS07065at 1556.841 kb on - strand, within ABZR86_RS07065at 1556.841 kb on - strand, within ABZR86_RS07065at 1556.876 kb on + strand, within ABZR86_RS07065at 1556.876 kb on + strand, within ABZR86_RS07065at 1556.876 kb on + strand, within ABZR86_RS07065at 1556.876 kb on + strand, within ABZR86_RS07065at 1556.876 kb on + strand, within ABZR86_RS07065at 1556.877 kb on - strand, within ABZR86_RS07065at 1556.877 kb on - strand, within ABZR86_RS07065at 1556.877 kb on - strand, within ABZR86_RS07065at 1556.877 kb on - strand, within ABZR86_RS07065at 1556.877 kb on - strand, within ABZR86_RS07065at 1556.886 kb on + strand, within ABZR86_RS07065at 1556.886 kb on + strand, within ABZR86_RS07065at 1556.886 kb on + strand, within ABZR86_RS07065at 1556.886 kb on + strand, within ABZR86_RS07065at 1556.886 kb on + strand, within ABZR86_RS07065at 1556.887 kb on - strand, within ABZR86_RS07065at 1557.035 kb on + strandat 1557.054 kb on + strandat 1557.054 kb on + strandat 1557.055 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
remove
1,553,431 + ABZR86_RS07055 0.20 -0.4
1,553,431 + ABZR86_RS07055 0.20 +0.0
1,553,431 + ABZR86_RS07055 0.20 +0.6
1,553,431 + ABZR86_RS07055 0.20 +0.2
1,553,431 + ABZR86_RS07055 0.20 -1.5
1,553,431 + ABZR86_RS07055 0.20 -0.4
1,553,432 - ABZR86_RS07055 0.20 -2.1
1,553,432 - ABZR86_RS07055 0.20 -0.4
1,553,485 + ABZR86_RS07055 0.25 -0.1
1,553,486 - ABZR86_RS07055 0.25 -0.5
1,553,548 + ABZR86_RS07055 0.31 -1.0
1,553,548 + ABZR86_RS07055 0.31 -1.1
1,553,548 + ABZR86_RS07055 0.31 -0.1
1,553,548 + ABZR86_RS07055 0.31 -0.2
1,553,549 - ABZR86_RS07055 0.31 +0.7
1,553,549 - ABZR86_RS07055 0.31 -1.6
1,553,549 - ABZR86_RS07055 0.31 -0.9
1,553,549 - ABZR86_RS07055 0.31 +0.5
1,553,550 + ABZR86_RS07055 0.31 -0.6
1,553,550 + ABZR86_RS07055 0.31 -2.0
1,553,550 + ABZR86_RS07055 0.31 -0.3
1,553,550 + ABZR86_RS07055 0.31 -0.7
1,553,551 - ABZR86_RS07055 0.31 +0.8
1,553,573 - ABZR86_RS07055 0.33 -1.0
1,553,629 + ABZR86_RS07055 0.38 -0.3
1,553,629 + ABZR86_RS07055 0.38 +0.8
1,553,630 - ABZR86_RS07055 0.38 -0.6
1,553,630 - ABZR86_RS07055 0.38 +0.4
1,553,630 - ABZR86_RS07055 0.38 +0.1
1,553,630 - ABZR86_RS07055 0.38 +0.4
1,553,782 + ABZR86_RS07055 0.52 -1.5
1,553,782 + ABZR86_RS07055 0.52 -1.2
1,553,782 + ABZR86_RS07055 0.52 +0.2
1,553,783 - ABZR86_RS07055 0.52 +0.1
1,553,783 - ABZR86_RS07055 0.52 +0.5
1,553,783 - ABZR86_RS07055 0.52 +0.7
1,553,783 - ABZR86_RS07055 0.52 +0.8
1,553,783 - ABZR86_RS07055 0.52 -0.4
1,553,783 - ABZR86_RS07055 0.52 -0.1
1,553,849 - ABZR86_RS07055 0.58 -0.9
1,553,849 - ABZR86_RS07055 0.58 +1.3
1,553,916 + ABZR86_RS07055 0.64 -0.4
1,553,916 + ABZR86_RS07055 0.64 -0.1
1,553,917 - ABZR86_RS07055 0.64 +2.3
1,553,917 - ABZR86_RS07055 0.64 +0.1
1,554,088 + ABZR86_RS07055 0.79 -0.1
1,554,088 + ABZR86_RS07055 0.79 -2.2
1,554,088 + ABZR86_RS07055 0.79 +0.3
1,554,088 + ABZR86_RS07055 0.79 -0.6
1,554,088 + ABZR86_RS07055 0.79 -1.2
1,554,088 + ABZR86_RS07055 0.79 -0.1
1,554,088 + ABZR86_RS07055 0.79 -0.4
1,554,089 - ABZR86_RS07055 0.79 -0.0
1,554,089 - ABZR86_RS07055 0.79 -0.2
1,554,089 - ABZR86_RS07055 0.79 -0.3
1,554,090 + ABZR86_RS07055 0.79 +0.4
1,554,090 + ABZR86_RS07055 0.79 -0.7
1,554,090 + ABZR86_RS07055 0.79 +0.1
1,554,090 + ABZR86_RS07055 0.79 +0.5
1,554,091 - ABZR86_RS07055 0.79 +0.8
1,554,091 - ABZR86_RS07055 0.79 -0.2
1,554,091 - ABZR86_RS07055 0.79 -0.3
1,554,091 - ABZR86_RS07055 0.79 +0.8
1,554,097 + ABZR86_RS07055 0.80 -1.8
1,554,097 + ABZR86_RS07055 0.80 -0.5
1,554,098 - ABZR86_RS07055 0.80 -0.6
1,554,184 + ABZR86_RS07055 0.88 -1.2
1,554,184 + ABZR86_RS07055 0.88 -1.5
1,554,185 - ABZR86_RS07055 0.88 -0.6
1,554,185 - ABZR86_RS07055 0.88 +0.0
1,554,185 - ABZR86_RS07055 0.88 -1.3
1,554,224 - -0.5
1,554,672 + ABZR86_RS07060 0.15 +0.2
1,555,074 + ABZR86_RS07060 0.38 -0.3
1,555,074 + ABZR86_RS07060 0.38 +0.2
1,555,074 + ABZR86_RS07060 0.38 +0.3
1,555,075 - ABZR86_RS07060 0.38 -1.2
1,555,285 - ABZR86_RS07060 0.50 -0.9
1,555,285 - ABZR86_RS07060 0.50 +0.1
1,555,426 + ABZR86_RS07060 0.58 -0.3
1,555,426 + ABZR86_RS07060 0.58 -0.2
1,555,430 + ABZR86_RS07060 0.58 -1.1
1,555,431 - ABZR86_RS07060 0.58 -0.6
1,555,605 + ABZR86_RS07060 0.68 -1.1
1,555,605 + ABZR86_RS07060 0.68 -0.3
1,556,095 + -0.2
1,556,095 + -0.3
1,556,096 - -0.7
1,556,139 + +0.9
1,556,139 + +0.3
1,556,139 + -0.0
1,556,140 - -0.0
1,556,203 + -0.5
1,556,289 + -0.3
1,556,318 + -1.6
1,556,385 + -1.0
1,556,721 + ABZR86_RS07065 0.55 -0.7
1,556,722 - ABZR86_RS07065 0.55 -0.2
1,556,722 - ABZR86_RS07065 0.55 +0.4
1,556,840 + ABZR86_RS07065 0.71 -1.4
1,556,840 + ABZR86_RS07065 0.71 -1.6
1,556,841 - ABZR86_RS07065 0.72 +1.1
1,556,841 - ABZR86_RS07065 0.72 -0.1
1,556,841 - ABZR86_RS07065 0.72 -1.1
1,556,841 - ABZR86_RS07065 0.72 +0.5
1,556,876 + ABZR86_RS07065 0.76 +1.1
1,556,876 + ABZR86_RS07065 0.76 +0.2
1,556,876 + ABZR86_RS07065 0.76 -1.2
1,556,876 + ABZR86_RS07065 0.76 +0.1
1,556,876 + ABZR86_RS07065 0.76 -0.0
1,556,877 - ABZR86_RS07065 0.77 +0.3
1,556,877 - ABZR86_RS07065 0.77 +0.2
1,556,877 - ABZR86_RS07065 0.77 +0.2
1,556,877 - ABZR86_RS07065 0.77 +1.7
1,556,877 - ABZR86_RS07065 0.77 +0.2
1,556,886 + ABZR86_RS07065 0.78 -0.1
1,556,886 + ABZR86_RS07065 0.78 -0.8
1,556,886 + ABZR86_RS07065 0.78 -0.4
1,556,886 + ABZR86_RS07065 0.78 -0.5
1,556,886 + ABZR86_RS07065 0.78 -0.7
1,556,887 - ABZR86_RS07065 0.78 -1.0
1,557,035 + +0.2
1,557,054 + -2.0
1,557,054 + -1.2
1,557,055 - +0.6

Or see this region's nucleotide sequence