Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS04905 and ABZR86_RS04910 overlap by 1 nucleotides ABZR86_RS04910 and ABZR86_RS04915 are separated by 4 nucleotides ABZR86_RS04915 and ABZR86_RS04920 are separated by 26 nucleotides ABZR86_RS04920 and ABZR86_RS04925 overlap by 4 nucleotides
ABZR86_RS04905: ABZR86_RS04905 - hypothetical protein, at 1,098,995 to 1,099,468
_RS04905
ABZR86_RS04910: ABZR86_RS04910 - DUF4150 domain-containing protein, at 1,099,468 to 1,099,866
_RS04910
ABZR86_RS04915: ABZR86_RS04915 - DUF3540 domain-containing protein, at 1,099,871 to 1,100,410
_RS04915
ABZR86_RS04920: ABZR86_RS04920 - pentapeptide repeat-containing protein, at 1,100,437 to 1,101,519
_RS04920
ABZR86_RS04925: ABZR86_RS04925 - DUF2169 domain-containing protein, at 1,101,516 to 1,104,104
_RS04925
Position (kb) 1100
1101
1102 Strain fitness (log2 ratio) -1
0
1 at 1099.836 kb on + strand at 1099.837 kb on - strand at 1099.995 kb on + strand, within ABZR86_RS04915 at 1099.996 kb on - strand, within ABZR86_RS04915 at 1099.996 kb on - strand, within ABZR86_RS04915 at 1100.494 kb on - strand at 1101.170 kb on - strand, within ABZR86_RS04920 at 1101.658 kb on + strand at 1101.718 kb on + strand at 1101.719 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 1,099,836 + -0.4 1,099,837 - +0.2 1,099,995 + ABZR86_RS04915 0.23 -0.6 1,099,996 - ABZR86_RS04915 0.23 -0.5 1,099,996 - ABZR86_RS04915 0.23 +0.2 1,100,494 - -0.6 1,101,170 - ABZR86_RS04920 0.68 -0.3 1,101,658 + -1.1 1,101,718 + +0.5 1,101,719 - +0.1
Or see this region's nucleotide sequence