Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00025 and ABZR86_RS00030 are separated by 22 nucleotides ABZR86_RS00030 and ABZR86_RS00035 are separated by 307 nucleotides
ABZR86_RS00025: ABZR86_RS00025 - family 43 glycosylhydrolase, at 2,912 to 4,528
_RS00025
ABZR86_RS00030: ABZR86_RS00030 - beta-xylosidase, at 4,551 to 6,074
_RS00030
ABZR86_RS00035: ABZR86_RS00035 - monovalent cation:proton antiporter-2 (CPA2) family protein, at 6,382 to 8,079
_RS00035
Position (kb) 4
5
6
7 Strain fitness (log2 ratio) -1
0
1 at 3.625 kb on - strand, within ABZR86_RS00025 at 3.633 kb on + strand, within ABZR86_RS00025 at 3.633 kb on + strand, within ABZR86_RS00025 at 3.634 kb on - strand, within ABZR86_RS00025 at 3.634 kb on - strand, within ABZR86_RS00025 at 3.788 kb on - strand, within ABZR86_RS00025 at 3.788 kb on - strand, within ABZR86_RS00025 at 3.834 kb on + strand, within ABZR86_RS00025 at 3.834 kb on + strand, within ABZR86_RS00025 at 3.835 kb on - strand, within ABZR86_RS00025 at 3.919 kb on + strand, within ABZR86_RS00025 at 3.921 kb on + strand, within ABZR86_RS00025 at 3.921 kb on + strand, within ABZR86_RS00025 at 3.922 kb on - strand, within ABZR86_RS00025 at 3.922 kb on - strand, within ABZR86_RS00025 at 4.000 kb on - strand, within ABZR86_RS00025 at 4.107 kb on + strand, within ABZR86_RS00025 at 4.146 kb on + strand, within ABZR86_RS00025 at 4.147 kb on - strand, within ABZR86_RS00025 at 4.147 kb on - strand, within ABZR86_RS00025 at 4.147 kb on - strand, within ABZR86_RS00025 at 4.302 kb on + strand, within ABZR86_RS00025 at 4.302 kb on + strand, within ABZR86_RS00025 at 4.302 kb on + strand, within ABZR86_RS00025 at 4.303 kb on - strand, within ABZR86_RS00025 at 4.303 kb on - strand, within ABZR86_RS00025 at 4.303 kb on - strand, within ABZR86_RS00025 at 4.303 kb on - strand, within ABZR86_RS00025 at 4.306 kb on - strand, within ABZR86_RS00025 at 4.368 kb on + strand at 4.369 kb on - strand at 4.369 kb on - strand at 4.824 kb on + strand, within ABZR86_RS00030 at 4.825 kb on - strand, within ABZR86_RS00030 at 4.996 kb on + strand, within ABZR86_RS00030 at 4.997 kb on - strand, within ABZR86_RS00030 at 5.002 kb on + strand, within ABZR86_RS00030 at 5.003 kb on - strand, within ABZR86_RS00030 at 5.011 kb on + strand, within ABZR86_RS00030 at 5.164 kb on + strand, within ABZR86_RS00030 at 5.164 kb on + strand, within ABZR86_RS00030 at 5.179 kb on + strand, within ABZR86_RS00030 at 5.209 kb on + strand, within ABZR86_RS00030 at 5.210 kb on - strand, within ABZR86_RS00030 at 5.233 kb on + strand, within ABZR86_RS00030 at 5.233 kb on + strand, within ABZR86_RS00030 at 5.371 kb on + strand, within ABZR86_RS00030 at 5.372 kb on - strand, within ABZR86_RS00030 at 5.372 kb on - strand, within ABZR86_RS00030 at 5.372 kb on - strand, within ABZR86_RS00030 at 5.519 kb on - strand, within ABZR86_RS00030 at 5.704 kb on + strand, within ABZR86_RS00030 at 5.705 kb on - strand, within ABZR86_RS00030 at 5.705 kb on - strand, within ABZR86_RS00030 at 5.705 kb on - strand, within ABZR86_RS00030 at 5.822 kb on - strand, within ABZR86_RS00030 at 5.848 kb on + strand, within ABZR86_RS00030 at 5.849 kb on - strand, within ABZR86_RS00030 at 5.849 kb on - strand, within ABZR86_RS00030 at 5.849 kb on - strand, within ABZR86_RS00030 at 6.294 kb on - strand at 6.294 kb on - strand at 6.423 kb on + strand at 6.423 kb on + strand at 6.423 kb on + strand at 6.424 kb on - strand at 6.424 kb on - strand at 6.424 kb on - strand at 6.424 kb on - strand at 6.493 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 3,625 - ABZR86_RS00025 0.44 -0.5 3,633 + ABZR86_RS00025 0.45 +0.1 3,633 + ABZR86_RS00025 0.45 -0.4 3,634 - ABZR86_RS00025 0.45 -0.3 3,634 - ABZR86_RS00025 0.45 -0.1 3,788 - ABZR86_RS00025 0.54 -0.1 3,788 - ABZR86_RS00025 0.54 -0.1 3,834 + ABZR86_RS00025 0.57 -1.2 3,834 + ABZR86_RS00025 0.57 -0.4 3,835 - ABZR86_RS00025 0.57 -0.0 3,919 + ABZR86_RS00025 0.62 +0.6 3,921 + ABZR86_RS00025 0.62 +0.5 3,921 + ABZR86_RS00025 0.62 +0.7 3,922 - ABZR86_RS00025 0.62 +0.4 3,922 - ABZR86_RS00025 0.62 -0.1 4,000 - ABZR86_RS00025 0.67 +0.4 4,107 + ABZR86_RS00025 0.74 -0.8 4,146 + ABZR86_RS00025 0.76 -0.6 4,147 - ABZR86_RS00025 0.76 -0.4 4,147 - ABZR86_RS00025 0.76 +0.4 4,147 - ABZR86_RS00025 0.76 -0.8 4,302 + ABZR86_RS00025 0.86 +0.6 4,302 + ABZR86_RS00025 0.86 -0.3 4,302 + ABZR86_RS00025 0.86 +0.1 4,303 - ABZR86_RS00025 0.86 +0.0 4,303 - ABZR86_RS00025 0.86 +0.5 4,303 - ABZR86_RS00025 0.86 -0.4 4,303 - ABZR86_RS00025 0.86 +0.5 4,306 - ABZR86_RS00025 0.86 +0.3 4,368 + -0.4 4,369 - +0.3 4,369 - +1.7 4,824 + ABZR86_RS00030 0.18 -0.4 4,825 - ABZR86_RS00030 0.18 +0.1 4,996 + ABZR86_RS00030 0.29 -0.2 4,997 - ABZR86_RS00030 0.29 -1.3 5,002 + ABZR86_RS00030 0.30 -0.5 5,003 - ABZR86_RS00030 0.30 +0.2 5,011 + ABZR86_RS00030 0.30 +0.6 5,164 + ABZR86_RS00030 0.40 +0.5 5,164 + ABZR86_RS00030 0.40 -0.0 5,179 + ABZR86_RS00030 0.41 +0.1 5,209 + ABZR86_RS00030 0.43 +0.4 5,210 - ABZR86_RS00030 0.43 -0.3 5,233 + ABZR86_RS00030 0.45 -0.1 5,233 + ABZR86_RS00030 0.45 +0.8 5,371 + ABZR86_RS00030 0.54 -0.2 5,372 - ABZR86_RS00030 0.54 -0.3 5,372 - ABZR86_RS00030 0.54 -0.1 5,372 - ABZR86_RS00030 0.54 +0.2 5,519 - ABZR86_RS00030 0.64 -0.0 5,704 + ABZR86_RS00030 0.76 -1.1 5,705 - ABZR86_RS00030 0.76 +0.1 5,705 - ABZR86_RS00030 0.76 +1.0 5,705 - ABZR86_RS00030 0.76 +0.2 5,822 - ABZR86_RS00030 0.83 -0.8 5,848 + ABZR86_RS00030 0.85 +0.9 5,849 - ABZR86_RS00030 0.85 -1.3 5,849 - ABZR86_RS00030 0.85 -1.5 5,849 - ABZR86_RS00030 0.85 +0.9 6,294 - -1.0 6,294 - +0.8 6,423 + -0.1 6,423 + +0.4 6,423 + -0.5 6,424 - -1.3 6,424 - -0.8 6,424 - +0.5 6,424 - -0.8 6,493 + +1.1
Or see this region's nucleotide sequence