Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00015

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00005 and ABZR86_RS00010 are separated by 551 nucleotidesABZR86_RS00010 and ABZR86_RS00015 overlap by 10 nucleotidesABZR86_RS00015 and ABZR86_RS00020 overlap by 4 nucleotidesABZR86_RS00020 and ABZR86_RS00025 are separated by 128 nucleotides ABZR86_RS00005: ABZR86_RS00005 - hypothetical protein, at 741 to 1,019 _RS00005 ABZR86_RS00010: ABZR86_RS00010 - arsenate reductase ArsC, at 1,571 to 1,966 _RS00010 ABZR86_RS00015: ABZR86_RS00015 - ArsI/CadI family heavy metal resistance metalloenzyme, at 1,957 to 2,445 _RS00015 ABZR86_RS00020: ABZR86_RS00020 - metalloregulator ArsR/SmtB family transcription factor, at 2,442 to 2,783 _RS00020 ABZR86_RS00025: ABZR86_RS00025 - family 43 glycosylhydrolase, at 2,912 to 4,528 _RS00025 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1 2at 1.337 kb on + strandat 1.337 kb on + strandat 1.495 kb on - strandat 1.645 kb on + strand, within ABZR86_RS00010at 1.646 kb on - strand, within ABZR86_RS00010at 1.646 kb on - strand, within ABZR86_RS00010at 1.788 kb on + strand, within ABZR86_RS00010at 1.883 kb on + strand, within ABZR86_RS00010at 1.884 kb on - strand, within ABZR86_RS00010at 1.884 kb on - strand, within ABZR86_RS00010at 1.884 kb on - strand, within ABZR86_RS00010at 1.884 kb on - strand, within ABZR86_RS00010at 1.884 kb on - strand, within ABZR86_RS00010at 2.075 kb on + strand, within ABZR86_RS00015at 2.075 kb on + strand, within ABZR86_RS00015at 2.076 kb on - strand, within ABZR86_RS00015at 2.078 kb on + strand, within ABZR86_RS00015at 2.079 kb on - strand, within ABZR86_RS00015at 2.079 kb on - strand, within ABZR86_RS00015at 2.079 kb on - strand, within ABZR86_RS00015at 2.079 kb on - strand, within ABZR86_RS00015at 2.095 kb on + strand, within ABZR86_RS00015at 2.100 kb on + strand, within ABZR86_RS00015at 2.100 kb on + strand, within ABZR86_RS00015at 2.101 kb on - strand, within ABZR86_RS00015at 2.101 kb on - strand, within ABZR86_RS00015at 2.143 kb on + strand, within ABZR86_RS00015at 2.143 kb on + strand, within ABZR86_RS00015at 2.144 kb on - strand, within ABZR86_RS00015at 2.163 kb on - strand, within ABZR86_RS00015at 2.163 kb on - strand, within ABZR86_RS00015at 2.387 kb on + strand, within ABZR86_RS00015at 2.387 kb on + strand, within ABZR86_RS00015at 2.387 kb on + strand, within ABZR86_RS00015at 2.388 kb on - strand, within ABZR86_RS00015at 2.388 kb on - strand, within ABZR86_RS00015at 2.554 kb on + strand, within ABZR86_RS00020at 2.555 kb on - strand, within ABZR86_RS00020at 2.621 kb on + strand, within ABZR86_RS00020at 2.913 kb on + strandat 2.980 kb on - strandat 2.980 kb on - strandat 3.087 kb on + strand, within ABZR86_RS00025at 3.088 kb on - strand, within ABZR86_RS00025at 3.181 kb on - strand, within ABZR86_RS00025at 3.240 kb on + strand, within ABZR86_RS00025at 3.301 kb on - strand, within ABZR86_RS00025

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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1,337 + -0.9
1,337 + +0.6
1,495 - -0.3
1,645 + ABZR86_RS00010 0.19 -0.2
1,646 - ABZR86_RS00010 0.19 -0.3
1,646 - ABZR86_RS00010 0.19 +0.1
1,788 + ABZR86_RS00010 0.55 +0.3
1,883 + ABZR86_RS00010 0.79 +2.0
1,884 - ABZR86_RS00010 0.79 -0.3
1,884 - ABZR86_RS00010 0.79 -0.8
1,884 - ABZR86_RS00010 0.79 -0.1
1,884 - ABZR86_RS00010 0.79 -1.3
1,884 - ABZR86_RS00010 0.79 +0.1
2,075 + ABZR86_RS00015 0.24 -0.5
2,075 + ABZR86_RS00015 0.24 -0.5
2,076 - ABZR86_RS00015 0.24 +0.5
2,078 + ABZR86_RS00015 0.25 +0.5
2,079 - ABZR86_RS00015 0.25 +0.5
2,079 - ABZR86_RS00015 0.25 -0.4
2,079 - ABZR86_RS00015 0.25 +0.2
2,079 - ABZR86_RS00015 0.25 +0.8
2,095 + ABZR86_RS00015 0.28 -0.4
2,100 + ABZR86_RS00015 0.29 -1.0
2,100 + ABZR86_RS00015 0.29 -0.3
2,101 - ABZR86_RS00015 0.29 -0.2
2,101 - ABZR86_RS00015 0.29 +0.5
2,143 + ABZR86_RS00015 0.38 +0.6
2,143 + ABZR86_RS00015 0.38 +0.6
2,144 - ABZR86_RS00015 0.38 +0.1
2,163 - ABZR86_RS00015 0.42 +0.2
2,163 - ABZR86_RS00015 0.42 +0.6
2,387 + ABZR86_RS00015 0.88 -0.6
2,387 + ABZR86_RS00015 0.88 -0.3
2,387 + ABZR86_RS00015 0.88 +0.2
2,388 - ABZR86_RS00015 0.88 +0.1
2,388 - ABZR86_RS00015 0.88 -0.1
2,554 + ABZR86_RS00020 0.33 -0.0
2,555 - ABZR86_RS00020 0.33 -0.3
2,621 + ABZR86_RS00020 0.52 -0.1
2,913 + -0.1
2,980 - -0.8
2,980 - -0.5
3,087 + ABZR86_RS00025 0.11 -1.9
3,088 - ABZR86_RS00025 0.11 -0.0
3,181 - ABZR86_RS00025 0.17 +0.7
3,240 + ABZR86_RS00025 0.20 +0.2
3,301 - ABZR86_RS00025 0.24 -0.1

Or see this region's nucleotide sequence