Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_R0090 and Shew_2636 are separated by 104 nucleotides Shew_2636 and Shew_2637 are separated by 81 nucleotides Shew_2637 and dapD are separated by 35 nucleotides
Shew_R0090: Shew_R0090 - no description, at 3,110,419 to 3,110,571
_R0090
Shew_2636: Shew_2636 - methionine aminopeptidase (RefSeq), at 3,110,676 to 3,111,473
_2636
Shew_2637: Shew_2637 - PII uridylyl-transferase (RefSeq), at 3,111,555 to 3,114,128
_2637
Shew_2638: dapD - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (RefSeq), at 3,114,164 to 3,114,988
dapD
Position (kb)
3111
3112
3113
3114
3115 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3111.504 kb on + strand at 3111.525 kb on + strand at 3111.783 kb on + strand at 3112.140 kb on - strand, within Shew_2637 at 3112.644 kb on - strand, within Shew_2637 at 3112.651 kb on + strand, within Shew_2637 at 3113.164 kb on + strand, within Shew_2637 at 3113.283 kb on - strand, within Shew_2637 at 3113.384 kb on - strand, within Shew_2637 at 3113.597 kb on + strand, within Shew_2637
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,111,504 + -0.6 3,111,525 + -0.1 3,111,783 + -3.3 3,112,140 - Shew_2637 0.23 -2.0 3,112,644 - Shew_2637 0.42 -1.8 3,112,651 + Shew_2637 0.43 -2.3 3,113,164 + Shew_2637 0.63 -0.1 3,113,283 - Shew_2637 0.67 -0.7 3,113,384 - Shew_2637 0.71 -3.3 3,113,597 + Shew_2637 0.79 -2.5
Or see this region's nucleotide sequence