Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1735 and Shew_1736 are separated by 64 nucleotides Shew_1736 and Shew_1737 are separated by 43 nucleotides Shew_1737 and Shew_1738 are separated by 39 nucleotides
Shew_1735: Shew_1735 - TonB-dependent receptor (RefSeq), at 1,985,370 to 1,987,511
_1735
Shew_1736: Shew_1736 - hypothetical protein (RefSeq), at 1,987,576 to 1,987,836
_1736
Shew_1737: Shew_1737 - nicotinamide mononucleotide transporter PnuC (RefSeq), at 1,987,880 to 1,988,527
_1737
Shew_1738: Shew_1738 - aminoglycoside phosphotransferase (RefSeq), at 1,988,567 to 1,989,706
_1738
Position (kb)
1987
1988
1989 Strain fitness (log2 ratio)
-1
0
1 at 1987.312 kb on - strand at 1987.653 kb on + strand, within Shew_1736 at 1987.984 kb on - strand, within Shew_1737 at 1988.424 kb on + strand, within Shew_1737 at 1988.424 kb on + strand, within Shew_1737 at 1988.432 kb on - strand, within Shew_1737 at 1988.432 kb on - strand, within Shew_1737 at 1988.463 kb on + strand at 1988.747 kb on - strand, within Shew_1738 at 1988.771 kb on + strand, within Shew_1738 at 1988.802 kb on + strand, within Shew_1738 at 1988.810 kb on - strand, within Shew_1738 at 1989.226 kb on + strand, within Shew_1738
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,987,312 - +0.2 1,987,653 + Shew_1736 0.30 +0.1 1,987,984 - Shew_1737 0.16 -1.2 1,988,424 + Shew_1737 0.84 +0.3 1,988,424 + Shew_1737 0.84 -0.5 1,988,432 - Shew_1737 0.85 -0.7 1,988,432 - Shew_1737 0.85 -0.6 1,988,463 + -0.3 1,988,747 - Shew_1738 0.16 +0.0 1,988,771 + Shew_1738 0.18 +0.6 1,988,802 + Shew_1738 0.21 -0.2 1,988,810 - Shew_1738 0.21 +0.7 1,989,226 + Shew_1738 0.58 -0.3
Or see this region's nucleotide sequence