Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1391 and Shew_1392 are separated by 131 nucleotides Shew_1392 and Shew_1393 are separated by 30 nucleotides Shew_1393 and Shew_1394 overlap by 1 nucleotides
Shew_1391: Shew_1391 - CheW protein (RefSeq), at 1,600,523 to 1,601,017
_1391
Shew_1392: Shew_1392 - hypothetical protein (RefSeq), at 1,601,149 to 1,601,556
_1392
Shew_1393: Shew_1393 - FlhB domain-containing protein (RefSeq), at 1,601,587 to 1,601,943
_1393
Shew_1394: Shew_1394 - hypothetical protein (RefSeq), at 1,601,943 to 1,604,096
_1394
Position (kb) 1601
1602 Strain fitness (log2 ratio) -1
0
1 at 1600.874 kb on - strand, within Shew_1391 at 1601.011 kb on + strand at 1601.019 kb on - strand at 1601.204 kb on + strand, within Shew_1392 at 1601.505 kb on + strand, within Shew_1392 at 1601.513 kb on - strand, within Shew_1392 at 1601.513 kb on - strand, within Shew_1392 at 1601.585 kb on + strand at 1601.592 kb on - strand at 1601.854 kb on + strand, within Shew_1393 at 1602.194 kb on - strand, within Shew_1394 at 1602.289 kb on - strand, within Shew_1394 at 1602.835 kb on + strand, within Shew_1394
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,600,874 - Shew_1391 0.71 +0.4 1,601,011 + -0.0 1,601,019 - -1.3 1,601,204 + Shew_1392 0.13 +0.2 1,601,505 + Shew_1392 0.87 +0.1 1,601,513 - Shew_1392 0.89 -0.5 1,601,513 - Shew_1392 0.89 +0.1 1,601,585 + +0.3 1,601,592 - +0.6 1,601,854 + Shew_1393 0.75 +0.6 1,602,194 - Shew_1394 0.12 +0.3 1,602,289 - Shew_1394 0.16 -0.9 1,602,835 + Shew_1394 0.41 +0.8
Or see this region's nucleotide sequence