Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1119 and Shew_R0024 are separated by 186 nucleotides Shew_R0024 and Shew_R0025 are separated by 7 nucleotides Shew_R0025 and Shew_1120 are separated by 386 nucleotides Shew_1120 and Shew_1121 are separated by 53 nucleotides Shew_1121 and Shew_1122 are separated by 76 nucleotides Shew_1122 and Shew_1123 are separated by 2 nucleotides
Shew_1119: Shew_1119 - glucose/galactose transporter (RefSeq), at 1,294,566 to 1,295,822
_1119
Shew_R0024: Shew_R0024 - tRNA-Thr (RefSeq), at 1,296,009 to 1,296,084
_R0024
Shew_R0025: Shew_R0025 - tRNA-Phe (RefSeq), at 1,296,092 to 1,296,167
_R0025
Shew_1120: Shew_1120 - cytochrome B561 (RefSeq), at 1,296,554 to 1,297,108
_1120
Shew_1121: Shew_1121 - hypothetical protein (RefSeq), at 1,297,162 to 1,297,695
_1121
Shew_1122: Shew_1122 - hypothetical protein (RefSeq), at 1,297,772 to 1,298,050
_1122
Shew_1123: Shew_1123 - A/G-specific adenine glycosylase (RefSeq), at 1,298,053 to 1,299,159
_1123
Position (kb) 1296
1297
1298 Strain fitness (log2 ratio) -1
0
1 at 1295.790 kb on + strand at 1295.805 kb on - strand at 1295.812 kb on + strand at 1296.731 kb on + strand, within Shew_1120 at 1296.731 kb on + strand, within Shew_1120 at 1296.731 kb on + strand, within Shew_1120 at 1296.739 kb on - strand, within Shew_1120 at 1296.831 kb on + strand, within Shew_1120 at 1297.037 kb on - strand, within Shew_1120 at 1297.170 kb on + strand at 1297.249 kb on + strand, within Shew_1121 at 1297.406 kb on + strand, within Shew_1121 at 1297.436 kb on + strand, within Shew_1121 at 1297.814 kb on - strand, within Shew_1122 at 1297.983 kb on + strand, within Shew_1122
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,295,790 + +0.2 1,295,805 - +0.3 1,295,812 + -0.6 1,296,731 + Shew_1120 0.32 +0.1 1,296,731 + Shew_1120 0.32 -0.0 1,296,731 + Shew_1120 0.32 +0.2 1,296,739 - Shew_1120 0.33 +0.3 1,296,831 + Shew_1120 0.50 +0.7 1,297,037 - Shew_1120 0.87 +0.6 1,297,170 + -0.7 1,297,249 + Shew_1121 0.16 +0.1 1,297,406 + Shew_1121 0.46 +0.0 1,297,436 + Shew_1121 0.51 +0.5 1,297,814 - Shew_1122 0.15 +0.5 1,297,983 + Shew_1122 0.76 +0.3
Or see this region's nucleotide sequence