Strain Fitness in Shewanella loihica PV-4 around Shew_0889

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0888 and Shew_0889 are separated by 267 nucleotidesShew_0889 and Shew_0890 are separated by 1 nucleotides Shew_0888: Shew_0888 - no description, at 1,008,328 to 1,009,505 _0888 Shew_0889: Shew_0889 - hypothetical protein (RefSeq), at 1,009,773 to 1,010,162 _0889 Shew_0890: Shew_0890 - secretion protein HlyD family protein (RefSeq), at 1,010,164 to 1,011,300 _0890 Position (kb) 1009 1010 1011Strain fitness (log2 ratio) -1 0 1at 1009.014 kb on + strand, within Shew_0888at 1009.064 kb on + strand, within Shew_0888at 1009.158 kb on + strand, within Shew_0888at 1009.619 kb on - strandat 1009.935 kb on - strand, within Shew_0889at 1010.060 kb on + strand, within Shew_0889at 1010.505 kb on + strand, within Shew_0890at 1010.512 kb on - strand, within Shew_0890at 1010.547 kb on + strand, within Shew_0890at 1010.550 kb on - strand, within Shew_0890at 1010.884 kb on - strand, within Shew_0890at 1011.123 kb on + strand, within Shew_0890

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,009,014 + Shew_0888 0.58 +0.5
1,009,064 + Shew_0888 0.62 -0.0
1,009,158 + Shew_0888 0.70 -0.1
1,009,619 - +0.3
1,009,935 - Shew_0889 0.42 -0.7
1,010,060 + Shew_0889 0.74 -1.5
1,010,505 + Shew_0890 0.30 +0.0
1,010,512 - Shew_0890 0.31 -0.9
1,010,547 + Shew_0890 0.34 +0.2
1,010,550 - Shew_0890 0.34 -0.1
1,010,884 - Shew_0890 0.63 -0.1
1,011,123 + Shew_0890 0.84 -0.1

Or see this region's nucleotide sequence