Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0803 and Shew_0804 overlap by 4 nucleotides Shew_0804 and Shew_0805 overlap by 4 nucleotides Shew_0805 and Shew_0806 overlap by 11 nucleotides
Shew_0803: Shew_0803 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 916,063 to 917,301
_0803
Shew_0804: Shew_0804 - two component transcriptional regulator (RefSeq), at 917,298 to 918,002
_0804
Shew_0805: Shew_0805 - hypothetical protein (RefSeq), at 917,999 to 918,394
_0805
Shew_0806: Shew_0806 - MltA-interacting MipA family protein (RefSeq), at 918,384 to 919,229
_0806
Position (kb) 917
918
919 Strain fitness (log2 ratio) -1
0
1 at 917.049 kb on + strand, within Shew_0803 at 917.057 kb on - strand, within Shew_0803 at 917.149 kb on - strand, within Shew_0803 at 917.195 kb on + strand at 917.463 kb on - strand, within Shew_0804 at 917.678 kb on + strand, within Shew_0804 at 917.720 kb on + strand, within Shew_0804 at 917.728 kb on - strand, within Shew_0804 at 917.810 kb on + strand, within Shew_0804 at 917.930 kb on + strand, within Shew_0804 at 918.201 kb on - strand, within Shew_0805 at 918.308 kb on - strand, within Shew_0805 at 918.367 kb on + strand at 918.835 kb on - strand, within Shew_0806 at 918.985 kb on + strand, within Shew_0806 at 919.075 kb on + strand, within Shew_0806 at 919.083 kb on + strand, within Shew_0806 at 919.230 kb on - strand at 919.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 917,049 + Shew_0803 0.80 +0.0 917,057 - Shew_0803 0.80 +0.3 917,149 - Shew_0803 0.88 +0.1 917,195 + -0.5 917,463 - Shew_0804 0.23 +0.2 917,678 + Shew_0804 0.54 +0.5 917,720 + Shew_0804 0.60 -0.7 917,728 - Shew_0804 0.61 +0.2 917,810 + Shew_0804 0.73 +0.1 917,930 + Shew_0804 0.90 +0.6 918,201 - Shew_0805 0.51 -0.3 918,308 - Shew_0805 0.78 -0.9 918,367 + -0.2 918,835 - Shew_0806 0.53 +0.2 918,985 + Shew_0806 0.71 +0.1 919,075 + Shew_0806 0.82 +1.6 919,083 + Shew_0806 0.83 +0.2 919,230 - +0.2 919,355 - -0.2
Or see this region's nucleotide sequence