Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0633 and Shew_0634 are separated by 97 nucleotides Shew_0634 and Shew_0635 are separated by 233 nucleotides Shew_0635 and Shew_0636 are separated by 137 nucleotides Shew_0636 and Shew_0637 are separated by 29 nucleotides
Shew_0633: Shew_0633 - hypothetical protein (RefSeq), at 720,299 to 721,741
_0633
Shew_0634: Shew_0634 - hypothetical protein (RefSeq), at 721,839 to 722,240
_0634
Shew_0635: Shew_0635 - hypothetical protein (RefSeq), at 722,474 to 723,169
_0635
Shew_0636: Shew_0636 - hypothetical protein (RefSeq), at 723,307 to 723,765
_0636
Shew_0637: Shew_0637 - hypothetical protein (RefSeq), at 723,795 to 724,472
_0637
Position (kb) 722
723
724 Strain fitness (log2 ratio) -1
0
1 at 721.812 kb on - strand at 721.817 kb on + strand at 721.964 kb on - strand, within Shew_0634 at 721.969 kb on - strand, within Shew_0634 at 722.219 kb on - strand at 722.473 kb on + strand at 722.546 kb on - strand, within Shew_0635 at 722.627 kb on + strand, within Shew_0635 at 722.655 kb on - strand, within Shew_0635 at 722.655 kb on - strand, within Shew_0635 at 722.920 kb on + strand, within Shew_0635 at 723.496 kb on - strand, within Shew_0636 at 723.649 kb on + strand, within Shew_0636 at 723.662 kb on - strand, within Shew_0636 at 723.755 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 721,812 - -0.2 721,817 + -0.6 721,964 - Shew_0634 0.31 +0.1 721,969 - Shew_0634 0.32 -1.1 722,219 - -0.3 722,473 + +0.1 722,546 - Shew_0635 0.10 +0.1 722,627 + Shew_0635 0.22 +0.8 722,655 - Shew_0635 0.26 -0.2 722,655 - Shew_0635 0.26 +0.5 722,920 + Shew_0635 0.64 -0.8 723,496 - Shew_0636 0.41 -0.8 723,649 + Shew_0636 0.75 -0.9 723,662 - Shew_0636 0.77 -0.8 723,755 + +0.2
Or see this region's nucleotide sequence