Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0515 and Shew_0516 are separated by 64 nucleotides Shew_0516 and Shew_0517 are separated by 512 nucleotides Shew_0517 and Shew_0518 are separated by 63 nucleotides Shew_0518 and Shew_0519 are separated by 78 nucleotides
Shew_0515: Shew_0515 - hypothetical protein (RefSeq), at 583,939 to 585,651
_0515
Shew_0516: Shew_0516 - cytochrome c family protein (RefSeq), at 585,716 to 586,045
_0516
Shew_0517: Shew_0517 - putative plasmid transfer protein (RefSeq), at 586,558 to 587,754
_0517
Shew_0518: Shew_0518 - hypothetical protein (RefSeq), at 587,818 to 588,558
_0518
Shew_0519: Shew_0519 - transcriptional repressor protein MetJ (RefSeq), at 588,637 to 588,951
_0519
Position (kb) 586
587
588 Strain fitness (log2 ratio) -1
0
1 at 585.603 kb on - strand at 585.951 kb on + strand, within Shew_0516 at 585.951 kb on + strand, within Shew_0516 at 585.975 kb on + strand, within Shew_0516 at 586.367 kb on + strand at 586.966 kb on + strand, within Shew_0517 at 587.067 kb on - strand, within Shew_0517 at 587.146 kb on - strand, within Shew_0517 at 587.231 kb on + strand, within Shew_0517 at 587.357 kb on + strand, within Shew_0517 at 587.375 kb on - strand, within Shew_0517 at 587.505 kb on - strand, within Shew_0517 at 587.555 kb on - strand, within Shew_0517 at 587.810 kb on - strand at 587.875 kb on - strand at 587.944 kb on - strand, within Shew_0518 at 587.944 kb on - strand, within Shew_0518 at 587.975 kb on - strand, within Shew_0518 at 587.985 kb on + strand, within Shew_0518 at 588.520 kb on - strand at 588.541 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 585,603 - +0.2 585,951 + Shew_0516 0.71 +0.1 585,951 + Shew_0516 0.71 -0.5 585,975 + Shew_0516 0.78 +0.7 586,367 + +1.0 586,966 + Shew_0517 0.34 +0.1 587,067 - Shew_0517 0.43 -0.1 587,146 - Shew_0517 0.49 -0.3 587,231 + Shew_0517 0.56 -0.3 587,357 + Shew_0517 0.67 +1.2 587,375 - Shew_0517 0.68 -0.5 587,505 - Shew_0517 0.79 -0.4 587,555 - Shew_0517 0.83 +0.1 587,810 - -0.2 587,875 - +0.5 587,944 - Shew_0518 0.17 +0.4 587,944 - Shew_0518 0.17 +0.0 587,975 - Shew_0518 0.21 +0.3 587,985 + Shew_0518 0.23 -0.0 588,520 - +0.8 588,541 + -0.2
Or see this region's nucleotide sequence