Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0411 and Shew_0412 overlap by 11 nucleotides Shew_0412 and Shew_0413 are separated by 12 nucleotides
Shew_0411: Shew_0411 - outer membrane efflux protein (RefSeq), at 464,481 to 465,884
_0411
Shew_0412: Shew_0412 - secretion protein HlyD family protein (RefSeq), at 465,874 to 466,845
_0412
Shew_0413: Shew_0413 - ABC-2 type transporter (RefSeq), at 466,858 to 468,030
_0413
Position (kb) 465
466
467 Strain fitness (log2 ratio) -1
0
1 at 464.937 kb on + strand, within Shew_0411 at 465.036 kb on - strand, within Shew_0411 at 465.243 kb on - strand, within Shew_0411 at 465.268 kb on + strand, within Shew_0411 at 465.276 kb on - strand, within Shew_0411 at 465.557 kb on + strand, within Shew_0411 at 465.797 kb on - strand at 465.797 kb on - strand at 465.797 kb on - strand at 465.858 kb on + strand at 466.097 kb on + strand, within Shew_0412 at 466.499 kb on + strand, within Shew_0412 at 466.519 kb on + strand, within Shew_0412 at 466.606 kb on - strand, within Shew_0412 at 466.636 kb on - strand, within Shew_0412 at 466.827 kb on - strand at 466.861 kb on + strand at 466.983 kb on - strand, within Shew_0413 at 467.115 kb on + strand, within Shew_0413 at 467.381 kb on - strand, within Shew_0413 at 467.438 kb on - strand, within Shew_0413 at 467.438 kb on - strand, within Shew_0413 at 467.542 kb on + strand, within Shew_0413 at 467.686 kb on + strand, within Shew_0413
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 464,937 + Shew_0411 0.32 -0.2 465,036 - Shew_0411 0.40 -1.2 465,243 - Shew_0411 0.54 +0.5 465,268 + Shew_0411 0.56 +0.0 465,276 - Shew_0411 0.57 +0.3 465,557 + Shew_0411 0.77 -0.7 465,797 - +0.5 465,797 - +0.5 465,797 - -0.3 465,858 + +0.2 466,097 + Shew_0412 0.23 +0.8 466,499 + Shew_0412 0.64 +0.5 466,519 + Shew_0412 0.66 +0.6 466,606 - Shew_0412 0.75 +1.2 466,636 - Shew_0412 0.78 -0.3 466,827 - +0.3 466,861 + +0.0 466,983 - Shew_0413 0.11 -0.1 467,115 + Shew_0413 0.22 +0.5 467,381 - Shew_0413 0.45 -0.0 467,438 - Shew_0413 0.49 +0.1 467,438 - Shew_0413 0.49 +0.8 467,542 + Shew_0413 0.58 -0.0 467,686 + Shew_0413 0.71 +0.1
Or see this region's nucleotide sequence