Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0371 and Shew_0372 are separated by 94 nucleotides Shew_0372 and Shew_0373 are separated by 21 nucleotides Shew_0373 and hslU are separated by 76 nucleotides
Shew_0371: Shew_0371 - AraC family transcriptional regulator (RefSeq), at 419,234 to 420,100
_0371
Shew_0372: Shew_0372 - hypothetical protein (RefSeq), at 420,195 to 420,629
_0372
Shew_0373: Shew_0373 - hypothetical protein (RefSeq), at 420,651 to 421,046
_0373
Shew_0374: hslU - ATP-dependent protease ATP-binding subunit (RefSeq), at 421,123 to 422,448
hslU
Position (kb) 420
421
422 Strain fitness (log2 ratio) -1
0
1 at 419.761 kb on + strand, within Shew_0371 at 419.890 kb on + strand, within Shew_0371 at 420.095 kb on + strand at 420.254 kb on + strand, within Shew_0372 at 420.343 kb on + strand, within Shew_0372 at 420.613 kb on + strand at 420.780 kb on + strand, within Shew_0373 at 420.886 kb on + strand, within Shew_0373 at 420.886 kb on + strand, within Shew_0373 at 421.058 kb on + strand at 421.559 kb on + strand, within hslU at 421.793 kb on - strand, within hslU
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 419,761 + Shew_0371 0.61 +0.3 419,890 + Shew_0371 0.76 +0.3 420,095 + +0.6 420,254 + Shew_0372 0.14 +0.5 420,343 + Shew_0372 0.34 +0.0 420,613 + -0.5 420,780 + Shew_0373 0.33 +0.4 420,886 + Shew_0373 0.59 +0.9 420,886 + Shew_0373 0.59 +0.6 421,058 + +1.2 421,559 + hslU Shew_0374 0.33 +0.1 421,793 - hslU Shew_0374 0.51 -0.6
Or see this region's nucleotide sequence