Strain Fitness in Shewanella loihica PV-4 around Shew_0261

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0260 and Shew_0261 are separated by 250 nucleotidesShew_0261 and Shew_0262 are separated by 17 nucleotides Shew_0260: Shew_0260 - hypothetical protein (RefSeq), at 279,538 to 280,386 _0260 Shew_0261: Shew_0261 - hypothetical protein (RefSeq), at 280,637 to 280,948 _0261 Shew_0262: Shew_0262 - hypothetical protein (RefSeq), at 280,966 to 282,420 _0262 Position (kb) 280 281Strain fitness (log2 ratio) -1 0 1at 279.875 kb on - strand, within Shew_0260at 279.972 kb on + strand, within Shew_0260at 280.112 kb on + strand, within Shew_0260at 280.308 kb on - strandat 280.380 kb on + strandat 280.388 kb on - strandat 280.743 kb on - strand, within Shew_0261at 280.950 kb on + strandat 280.958 kb on - strandat 280.964 kb on - strandat 281.023 kb on + strandat 281.092 kb on - strandat 281.163 kb on + strand, within Shew_0262at 281.243 kb on - strand, within Shew_0262at 281.416 kb on - strand, within Shew_0262at 281.534 kb on + strand, within Shew_0262at 281.537 kb on - strand, within Shew_0262at 281.552 kb on + strand, within Shew_0262at 281.560 kb on - strand, within Shew_0262at 281.613 kb on + strand, within Shew_0262at 281.923 kb on + strand, within Shew_0262

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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279,875 - Shew_0260 0.40 +0.9
279,972 + Shew_0260 0.51 +0.1
280,112 + Shew_0260 0.68 -1.0
280,308 - -0.2
280,380 + -0.5
280,388 - -1.5
280,743 - Shew_0261 0.34 +1.2
280,950 + -0.2
280,958 - +0.7
280,964 - -0.1
281,023 + -0.3
281,092 - +0.1
281,163 + Shew_0262 0.14 -0.4
281,243 - Shew_0262 0.19 +0.3
281,416 - Shew_0262 0.31 +0.2
281,534 + Shew_0262 0.39 -0.3
281,537 - Shew_0262 0.39 +0.0
281,552 + Shew_0262 0.40 +0.0
281,560 - Shew_0262 0.41 +1.0
281,613 + Shew_0262 0.44 -0.0
281,923 + Shew_0262 0.66 +0.6

Or see this region's nucleotide sequence