Strain Fitness in Shewanella loihica PV-4 around Shew_0256

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0255 and Shew_0256 are separated by 528 nucleotidesShew_0256 and Shew_0257 are separated by 135 nucleotides Shew_0255: Shew_0255 - ion transport 2 domain-containing protein (RefSeq), at 273,651 to 274,331 _0255 Shew_0256: Shew_0256 - hypothetical protein (RefSeq), at 274,860 to 275,438 _0256 Shew_0257: Shew_0257 - peptidase S9 prolyl oligopeptidase (RefSeq), at 275,574 to 277,652 _0257 Position (kb) 274 275 276Strain fitness (log2 ratio) -1 0 1 2 3at 273.872 kb on - strand, within Shew_0255at 273.873 kb on - strand, within Shew_0255at 273.873 kb on - strand, within Shew_0255at 273.875 kb on + strand, within Shew_0255at 273.921 kb on + strand, within Shew_0255at 273.931 kb on + strand, within Shew_0255at 273.940 kb on - strand, within Shew_0255at 273.970 kb on - strand, within Shew_0255at 274.036 kb on + strand, within Shew_0255at 274.041 kb on + strand, within Shew_0255at 274.049 kb on - strand, within Shew_0255at 274.059 kb on + strand, within Shew_0255at 274.059 kb on + strand, within Shew_0255at 274.059 kb on + strand, within Shew_0255at 274.063 kb on - strand, within Shew_0255at 274.076 kb on + strand, within Shew_0255at 274.076 kb on + strand, within Shew_0255at 274.084 kb on - strand, within Shew_0255at 274.084 kb on - strand, within Shew_0255at 274.084 kb on - strand, within Shew_0255at 274.095 kb on + strand, within Shew_0255at 274.096 kb on + strand, within Shew_0255at 274.096 kb on + strand, within Shew_0255at 274.096 kb on + strand, within Shew_0255at 274.096 kb on + strand, within Shew_0255at 274.096 kb on + strand, within Shew_0255at 274.096 kb on + strand, within Shew_0255at 274.104 kb on - strand, within Shew_0255at 274.104 kb on - strand, within Shew_0255at 274.104 kb on - strand, within Shew_0255at 274.104 kb on - strand, within Shew_0255at 274.104 kb on - strand, within Shew_0255at 274.104 kb on - strand, within Shew_0255at 274.113 kb on + strand, within Shew_0255at 274.120 kb on + strand, within Shew_0255at 274.179 kb on + strand, within Shew_0255at 274.179 kb on + strand, within Shew_0255at 274.179 kb on + strand, within Shew_0255at 274.187 kb on - strand, within Shew_0255at 274.187 kb on - strand, within Shew_0255at 274.187 kb on - strand, within Shew_0255at 274.187 kb on - strand, within Shew_0255at 274.187 kb on - strand, within Shew_0255at 274.187 kb on - strand, within Shew_0255at 274.188 kb on + strand, within Shew_0255at 274.194 kb on + strand, within Shew_0255at 274.195 kb on + strand, within Shew_0255at 274.195 kb on + strand, within Shew_0255at 274.195 kb on + strand, within Shew_0255at 274.195 kb on + strand, within Shew_0255at 274.201 kb on - strand, within Shew_0255at 274.203 kb on - strand, within Shew_0255at 274.203 kb on - strand, within Shew_0255at 274.203 kb on - strand, within Shew_0255at 274.205 kb on + strand, within Shew_0255at 274.205 kb on + strand, within Shew_0255at 274.213 kb on - strand, within Shew_0255at 274.216 kb on - strand, within Shew_0255at 274.219 kb on + strand, within Shew_0255at 274.243 kb on + strand, within Shew_0255at 274.246 kb on - strand, within Shew_0255at 274.251 kb on - strand, within Shew_0255at 274.284 kb on - strandat 274.284 kb on - strandat 274.298 kb on - strandat 274.300 kb on + strandat 274.397 kb on + strandat 274.400 kb on + strandat 274.418 kb on - strandat 274.418 kb on - strandat 274.434 kb on + strandat 274.434 kb on + strandat 274.434 kb on + strandat 274.442 kb on - strandat 274.442 kb on - strandat 274.593 kb on + strandat 274.608 kb on - strandat 274.629 kb on - strandat 274.650 kb on - strandat 274.650 kb on - strandat 274.655 kb on + strandat 274.745 kb on - strandat 274.746 kb on + strandat 275.142 kb on - strand, within Shew_0256at 275.142 kb on - strand, within Shew_0256at 275.617 kb on + strandat 275.646 kb on - strandat 275.672 kb on - strandat 275.683 kb on + strandat 275.719 kb on - strandat 275.850 kb on - strand, within Shew_0257at 275.902 kb on - strand, within Shew_0257at 276.164 kb on + strand, within Shew_0257at 276.365 kb on + strand, within Shew_0257at 276.373 kb on - strand, within Shew_0257

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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273,872 - Shew_0255 0.32 -0.2
273,873 - Shew_0255 0.33 +0.9
273,873 - Shew_0255 0.33 -0.1
273,875 + Shew_0255 0.33 -0.2
273,921 + Shew_0255 0.40 -0.3
273,931 + Shew_0255 0.41 +0.3
273,940 - Shew_0255 0.42 -0.1
273,970 - Shew_0255 0.47 -0.3
274,036 + Shew_0255 0.57 +0.2
274,041 + Shew_0255 0.57 +0.1
274,049 - Shew_0255 0.58 -0.4
274,059 + Shew_0255 0.60 -0.3
274,059 + Shew_0255 0.60 -1.0
274,059 + Shew_0255 0.60 +0.9
274,063 - Shew_0255 0.60 +0.2
274,076 + Shew_0255 0.62 -0.2
274,076 + Shew_0255 0.62 +0.1
274,084 - Shew_0255 0.64 +0.1
274,084 - Shew_0255 0.64 +0.1
274,084 - Shew_0255 0.64 +1.9
274,095 + Shew_0255 0.65 +0.3
274,096 + Shew_0255 0.65 +0.3
274,096 + Shew_0255 0.65 +0.2
274,096 + Shew_0255 0.65 +0.0
274,096 + Shew_0255 0.65 +0.1
274,096 + Shew_0255 0.65 -0.9
274,096 + Shew_0255 0.65 +0.0
274,104 - Shew_0255 0.67 +0.1
274,104 - Shew_0255 0.67 +0.5
274,104 - Shew_0255 0.67 -0.1
274,104 - Shew_0255 0.67 +1.4
274,104 - Shew_0255 0.67 -0.2
274,104 - Shew_0255 0.67 +0.4
274,113 + Shew_0255 0.68 -0.0
274,120 + Shew_0255 0.69 -0.5
274,179 + Shew_0255 0.78 +0.0
274,179 + Shew_0255 0.78 +0.1
274,179 + Shew_0255 0.78 -0.0
274,187 - Shew_0255 0.79 +0.5
274,187 - Shew_0255 0.79 +0.6
274,187 - Shew_0255 0.79 -0.5
274,187 - Shew_0255 0.79 +0.7
274,187 - Shew_0255 0.79 +0.2
274,187 - Shew_0255 0.79 +0.8
274,188 + Shew_0255 0.79 +0.1
274,194 + Shew_0255 0.80 +0.0
274,195 + Shew_0255 0.80 +0.9
274,195 + Shew_0255 0.80 -0.1
274,195 + Shew_0255 0.80 +0.1
274,195 + Shew_0255 0.80 +0.1
274,201 - Shew_0255 0.81 +0.2
274,203 - Shew_0255 0.81 +1.2
274,203 - Shew_0255 0.81 -0.6
274,203 - Shew_0255 0.81 +0.0
274,205 + Shew_0255 0.81 -0.2
274,205 + Shew_0255 0.81 +1.1
274,213 - Shew_0255 0.83 +0.2
274,216 - Shew_0255 0.83 +0.2
274,219 + Shew_0255 0.83 -0.1
274,243 + Shew_0255 0.87 +0.2
274,246 - Shew_0255 0.87 -0.1
274,251 - Shew_0255 0.88 +0.6
274,284 - +0.3
274,284 - +0.0
274,298 - +0.4
274,300 + -0.0
274,397 + -0.2
274,400 + +0.5
274,418 - +3.0
274,418 - +0.1
274,434 + -0.2
274,434 + -0.2
274,434 + +0.5
274,442 - +0.1
274,442 - +0.1
274,593 + +0.0
274,608 - -0.1
274,629 - -0.4
274,650 - +0.2
274,650 - +0.7
274,655 + -0.1
274,745 - +0.1
274,746 + +0.2
275,142 - Shew_0256 0.49 +1.4
275,142 - Shew_0256 0.49 +0.0
275,617 + -0.2
275,646 - -0.4
275,672 - +0.2
275,683 + +0.3
275,719 - +0.1
275,850 - Shew_0257 0.13 +0.2
275,902 - Shew_0257 0.16 +0.8
276,164 + Shew_0257 0.28 +0.3
276,365 + Shew_0257 0.38 +0.6
276,373 - Shew_0257 0.38 -0.3

Or see this region's nucleotide sequence