Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0082 and Shew_0083 are separated by 134 nucleotides Shew_0083 and Shew_0084 are separated by 81 nucleotides Shew_0084 and Shew_0085 are separated by 75 nucleotides
Shew_0082: Shew_0082 - hypothetical protein (RefSeq), at 95,660 to 96,109
_0082
Shew_0083: Shew_0083 - MOSC domain-containing protein (RefSeq), at 96,244 to 96,936
_0083
Shew_0084: Shew_0084 - hypothetical protein (RefSeq), at 97,018 to 97,338
_0084
Shew_0085: Shew_0085 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 97,414 to 99,330
_0085
Position (kb) 97
98 Strain fitness (log2 ratio) -1
0
1 at 96.087 kb on - strand at 96.187 kb on - strand at 96.371 kb on - strand, within Shew_0083 at 96.658 kb on + strand, within Shew_0083 at 96.747 kb on - strand, within Shew_0083 at 96.763 kb on - strand, within Shew_0083 at 96.805 kb on - strand, within Shew_0083 at 97.217 kb on + strand, within Shew_0084 at 97.410 kb on - strand at 97.420 kb on - strand at 97.499 kb on - strand at 97.644 kb on + strand, within Shew_0085 at 97.644 kb on + strand, within Shew_0085 at 97.652 kb on - strand, within Shew_0085 at 97.833 kb on - strand, within Shew_0085 at 97.901 kb on + strand, within Shew_0085 at 98.288 kb on + strand, within Shew_0085
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 96,087 - +0.1 96,187 - +0.2 96,371 - Shew_0083 0.18 -0.6 96,658 + Shew_0083 0.60 -0.1 96,747 - Shew_0083 0.73 -0.2 96,763 - Shew_0083 0.75 -0.1 96,805 - Shew_0083 0.81 -0.1 97,217 + Shew_0084 0.62 -0.8 97,410 - -1.0 97,420 - +0.5 97,499 - -0.3 97,644 + Shew_0085 0.12 +0.5 97,644 + Shew_0085 0.12 +0.5 97,652 - Shew_0085 0.12 -0.2 97,833 - Shew_0085 0.22 -0.1 97,901 + Shew_0085 0.25 +0.4 98,288 + Shew_0085 0.46 -0.0
Or see this region's nucleotide sequence