Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.618.1 and Xcc-8004.619.1 are separated by 123 nucleotides Xcc-8004.619.1 and Xcc-8004.621.1 are separated by 124 nucleotides Xcc-8004.621.1 and Xcc-8004.622.1 are separated by 123 nucleotides Xcc-8004.622.1 and Xcc-8004.623.1 overlap by 8 nucleotides
Xcc-8004.618.1: Xcc-8004.618.1 - Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 571,250 to 571,828
Xcc-8004.618.1
Xcc-8004.619.1: Xcc-8004.619.1 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 571,952 to 572,584
Xcc-8004.619.1
Xcc-8004.621.1: Xcc-8004.621.1 - Anthranilate phosphoribosyltransferase (EC 2.4.2.18), at 572,709 to 573,746
Xcc-8004.621.1
Xcc-8004.622.1: Xcc-8004.622.1 - Indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 573,870 to 574,667
Xcc-8004.622.1
Xcc-8004.623.1: Xcc-8004.623.1 - Phosphoserine phosphatase, at 574,660 to 575,376
Xcc-8004.623.1
Position (kb) 572
573
574 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 571.928 kb on + strand at 571.928 kb on + strand at 571.929 kb on - strand at 572.124 kb on - strand, within Xcc-8004.619.1 at 572.124 kb on - strand, within Xcc-8004.619.1 at 572.124 kb on - strand, within Xcc-8004.619.1 at 572.480 kb on + strand, within Xcc-8004.619.1 at 572.481 kb on - strand, within Xcc-8004.619.1 at 572.481 kb on - strand, within Xcc-8004.619.1 at 572.531 kb on + strand at 572.624 kb on + strand at 572.625 kb on - strand at 572.692 kb on - strand at 572.692 kb on - strand at 573.171 kb on + strand, within Xcc-8004.621.1 at 573.171 kb on + strand, within Xcc-8004.621.1 at 573.171 kb on + strand, within Xcc-8004.621.1 at 573.172 kb on - strand, within Xcc-8004.621.1 at 573.172 kb on - strand, within Xcc-8004.621.1 at 573.448 kb on + strand, within Xcc-8004.621.1 at 573.457 kb on - strand, within Xcc-8004.621.1 at 573.615 kb on + strand, within Xcc-8004.621.1 at 573.615 kb on + strand, within Xcc-8004.621.1 at 573.616 kb on - strand, within Xcc-8004.621.1 at 573.616 kb on - strand, within Xcc-8004.621.1 at 573.616 kb on - strand, within Xcc-8004.621.1 at 573.616 kb on - strand, within Xcc-8004.621.1 at 573.708 kb on + strand at 573.709 kb on - strand at 573.709 kb on - strand at 573.878 kb on + strand at 573.963 kb on - strand, within Xcc-8004.622.1 at 574.048 kb on + strand, within Xcc-8004.622.1 at 574.048 kb on + strand, within Xcc-8004.622.1 at 574.049 kb on - strand, within Xcc-8004.622.1 at 574.161 kb on + strand, within Xcc-8004.622.1 at 574.161 kb on + strand, within Xcc-8004.622.1 at 574.161 kb on + strand, within Xcc-8004.622.1 at 574.162 kb on - strand, within Xcc-8004.622.1 at 574.162 kb on - strand, within Xcc-8004.622.1 at 574.162 kb on - strand, within Xcc-8004.622.1 at 574.186 kb on - strand, within Xcc-8004.622.1 at 574.260 kb on + strand, within Xcc-8004.622.1 at 574.261 kb on - strand, within Xcc-8004.622.1 at 574.649 kb on - strand at 574.649 kb on - strand at 574.672 kb on + strand at 574.672 kb on + strand at 574.672 kb on + strand at 574.730 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 571,928 + +2.0 571,928 + +1.4 571,929 - -0.5 572,124 - Xcc-8004.619.1 0.27 -1.1 572,124 - Xcc-8004.619.1 0.27 -0.7 572,124 - Xcc-8004.619.1 0.27 +0.4 572,480 + Xcc-8004.619.1 0.83 -1.0 572,481 - Xcc-8004.619.1 0.84 -1.0 572,481 - Xcc-8004.619.1 0.84 +1.2 572,531 + -0.6 572,624 + -1.2 572,625 - -0.8 572,692 - -0.5 572,692 - -1.0 573,171 + Xcc-8004.621.1 0.45 -4.5 573,171 + Xcc-8004.621.1 0.45 -4.4 573,171 + Xcc-8004.621.1 0.45 -2.4 573,172 - Xcc-8004.621.1 0.45 -1.0 573,172 - Xcc-8004.621.1 0.45 -4.3 573,448 + Xcc-8004.621.1 0.71 -3.0 573,457 - Xcc-8004.621.1 0.72 -2.4 573,615 + Xcc-8004.621.1 0.87 -3.0 573,615 + Xcc-8004.621.1 0.87 -3.8 573,616 - Xcc-8004.621.1 0.87 -3.6 573,616 - Xcc-8004.621.1 0.87 -3.8 573,616 - Xcc-8004.621.1 0.87 -3.9 573,616 - Xcc-8004.621.1 0.87 -4.6 573,708 + -3.8 573,709 - -1.4 573,709 - -3.0 573,878 + -4.6 573,963 - Xcc-8004.622.1 0.12 -3.3 574,048 + Xcc-8004.622.1 0.22 -4.1 574,048 + Xcc-8004.622.1 0.22 -2.7 574,049 - Xcc-8004.622.1 0.22 -3.3 574,161 + Xcc-8004.622.1 0.36 -3.6 574,161 + Xcc-8004.622.1 0.36 -2.4 574,161 + Xcc-8004.622.1 0.36 -3.0 574,162 - Xcc-8004.622.1 0.37 -4.3 574,162 - Xcc-8004.622.1 0.37 -2.7 574,162 - Xcc-8004.622.1 0.37 -3.3 574,186 - Xcc-8004.622.1 0.40 -4.4 574,260 + Xcc-8004.622.1 0.49 -4.0 574,261 - Xcc-8004.622.1 0.49 -0.9 574,649 - -0.9 574,649 - -2.4 574,672 + -0.4 574,672 + -0.3 574,672 + +0.1 574,730 - -1.1
Or see this region's nucleotide sequence