Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3976.1 and Xcc-8004.3977.1 are separated by 93 nucleotides Xcc-8004.3977.1 and Xcc-8004.3978.1 overlap by 4 nucleotides Xcc-8004.3978.1 and Xcc-8004.3979.1 are separated by 2 nucleotides
Xcc-8004.3976.1: Xcc-8004.3976.1 - 2-methylaconitate cis-trans isomerase, at 3,854,726 to 3,855,925
Xcc-8004.3976.1
Xcc-8004.3977.1: Xcc-8004.3977.1 - FIG01214671: hypothetical protein, at 3,856,019 to 3,856,336
Xcc-8004.3977.1
Xcc-8004.3978.1: Xcc-8004.3978.1 - FIG01211989: hypothetical protein, at 3,856,333 to 3,856,659
Xcc-8004.3978.1
Xcc-8004.3979.1: Xcc-8004.3979.1 - 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79), at 3,856,662 to 3,859,256
Xcc-8004.3979.1
Position (kb) 3856
3857 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3855.669 kb on + strand, within Xcc-8004.3976.1 at 3855.669 kb on + strand, within Xcc-8004.3976.1 at 3855.670 kb on - strand, within Xcc-8004.3976.1 at 3855.765 kb on + strand, within Xcc-8004.3976.1 at 3855.888 kb on + strand at 3855.889 kb on - strand at 3855.889 kb on - strand at 3856.049 kb on - strand at 3856.104 kb on + strand, within Xcc-8004.3977.1 at 3856.105 kb on - strand, within Xcc-8004.3977.1 at 3856.116 kb on + strand, within Xcc-8004.3977.1 at 3856.180 kb on + strand, within Xcc-8004.3977.1 at 3856.181 kb on - strand, within Xcc-8004.3977.1 at 3856.181 kb on - strand, within Xcc-8004.3977.1 at 3856.237 kb on + strand, within Xcc-8004.3977.1 at 3856.237 kb on + strand, within Xcc-8004.3977.1 at 3856.237 kb on + strand, within Xcc-8004.3977.1 at 3856.238 kb on - strand, within Xcc-8004.3977.1 at 3856.238 kb on - strand, within Xcc-8004.3977.1 at 3856.238 kb on - strand, within Xcc-8004.3977.1 at 3856.238 kb on - strand, within Xcc-8004.3977.1 at 3856.276 kb on - strand, within Xcc-8004.3977.1 at 3856.484 kb on + strand, within Xcc-8004.3978.1 at 3856.485 kb on - strand, within Xcc-8004.3978.1 at 3856.485 kb on - strand, within Xcc-8004.3978.1 at 3856.502 kb on + strand, within Xcc-8004.3978.1 at 3856.502 kb on + strand, within Xcc-8004.3978.1 at 3856.649 kb on + strand at 3856.649 kb on + strand at 3856.649 kb on + strand at 3856.649 kb on + strand at 3856.650 kb on - strand at 3856.660 kb on - strand at 3856.726 kb on + strand at 3856.726 kb on + strand at 3856.726 kb on + strand at 3857.077 kb on + strand, within Xcc-8004.3979.1 at 3857.078 kb on - strand, within Xcc-8004.3979.1 at 3857.078 kb on - strand, within Xcc-8004.3979.1 at 3857.078 kb on - strand, within Xcc-8004.3979.1 at 3857.078 kb on - strand, within Xcc-8004.3979.1 at 3857.243 kb on - strand, within Xcc-8004.3979.1 at 3857.284 kb on + strand, within Xcc-8004.3979.1 at 3857.285 kb on - strand, within Xcc-8004.3979.1 at 3857.285 kb on - strand, within Xcc-8004.3979.1 at 3857.434 kb on + strand, within Xcc-8004.3979.1 at 3857.435 kb on - strand, within Xcc-8004.3979.1 at 3857.435 kb on - strand, within Xcc-8004.3979.1 at 3857.435 kb on - strand, within Xcc-8004.3979.1 at 3857.438 kb on + strand, within Xcc-8004.3979.1 at 3857.459 kb on - strand, within Xcc-8004.3979.1 at 3857.459 kb on - strand, within Xcc-8004.3979.1 at 3857.512 kb on + strand, within Xcc-8004.3979.1 at 3857.513 kb on - strand, within Xcc-8004.3979.1 at 3857.513 kb on - strand, within Xcc-8004.3979.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 3,855,669 + Xcc-8004.3976.1 0.79 +0.5 3,855,669 + Xcc-8004.3976.1 0.79 -0.1 3,855,670 - Xcc-8004.3976.1 0.79 +1.2 3,855,765 + Xcc-8004.3976.1 0.87 -2.6 3,855,888 + -1.6 3,855,889 - -0.8 3,855,889 - -1.4 3,856,049 - -1.5 3,856,104 + Xcc-8004.3977.1 0.27 -1.1 3,856,105 - Xcc-8004.3977.1 0.27 +0.8 3,856,116 + Xcc-8004.3977.1 0.31 -0.1 3,856,180 + Xcc-8004.3977.1 0.51 -1.2 3,856,181 - Xcc-8004.3977.1 0.51 +0.7 3,856,181 - Xcc-8004.3977.1 0.51 -0.8 3,856,237 + Xcc-8004.3977.1 0.69 -0.6 3,856,237 + Xcc-8004.3977.1 0.69 -0.5 3,856,237 + Xcc-8004.3977.1 0.69 +0.5 3,856,238 - Xcc-8004.3977.1 0.69 -0.4 3,856,238 - Xcc-8004.3977.1 0.69 -0.7 3,856,238 - Xcc-8004.3977.1 0.69 +0.2 3,856,238 - Xcc-8004.3977.1 0.69 +0.6 3,856,276 - Xcc-8004.3977.1 0.81 -1.9 3,856,484 + Xcc-8004.3978.1 0.46 -0.2 3,856,485 - Xcc-8004.3978.1 0.46 -0.6 3,856,485 - Xcc-8004.3978.1 0.46 -1.2 3,856,502 + Xcc-8004.3978.1 0.52 +0.7 3,856,502 + Xcc-8004.3978.1 0.52 -1.2 3,856,649 + +0.2 3,856,649 + +0.0 3,856,649 + -3.4 3,856,649 + +0.1 3,856,650 - -0.1 3,856,660 - +1.4 3,856,726 + +1.8 3,856,726 + -0.1 3,856,726 + -0.4 3,857,077 + Xcc-8004.3979.1 0.16 -0.6 3,857,078 - Xcc-8004.3979.1 0.16 -1.7 3,857,078 - Xcc-8004.3979.1 0.16 -3.1 3,857,078 - Xcc-8004.3979.1 0.16 -0.6 3,857,078 - Xcc-8004.3979.1 0.16 -0.8 3,857,243 - Xcc-8004.3979.1 0.22 +0.2 3,857,284 + Xcc-8004.3979.1 0.24 -0.4 3,857,285 - Xcc-8004.3979.1 0.24 -2.8 3,857,285 - Xcc-8004.3979.1 0.24 -0.6 3,857,434 + Xcc-8004.3979.1 0.30 -0.2 3,857,435 - Xcc-8004.3979.1 0.30 -1.7 3,857,435 - Xcc-8004.3979.1 0.30 +0.3 3,857,435 - Xcc-8004.3979.1 0.30 +0.8 3,857,438 + Xcc-8004.3979.1 0.30 -1.2 3,857,459 - Xcc-8004.3979.1 0.31 -0.8 3,857,459 - Xcc-8004.3979.1 0.31 -2.0 3,857,512 + Xcc-8004.3979.1 0.33 -1.9 3,857,513 - Xcc-8004.3979.1 0.33 -1.0 3,857,513 - Xcc-8004.3979.1 0.33 -1.5
Or see this region's nucleotide sequence