Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4504 and Pf6N2E2_4505 are separated by 7 nucleotides Pf6N2E2_4505 and Pf6N2E2_4506 overlap by 4 nucleotides Pf6N2E2_4506 and Pf6N2E2_4507 are separated by 25 nucleotides
Pf6N2E2_4504 - Alkanesulfonate monooxygenase (EC 1.14.14.5), at 5,236,121 to 5,237,269
_4504
Pf6N2E2_4505 - Alkanesulfonates transport system permease protein, at 5,237,277 to 5,238,059
_4505
Pf6N2E2_4506 - Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB, at 5,238,056 to 5,238,862
_4506
Pf6N2E2_4507 - Organosulfonate utilization protein SsuF, at 5,238,888 to 5,239,103
_4507
Position (kb) 5237
5238
5239 Strain fitness (log2 ratio) -1
0
1 at 5236.532 kb on - strand, within Pf6N2E2_4504 at 5236.568 kb on + strand, within Pf6N2E2_4504 at 5236.569 kb on - strand, within Pf6N2E2_4504 at 5236.591 kb on + strand, within Pf6N2E2_4504 at 5236.785 kb on + strand, within Pf6N2E2_4504 at 5237.075 kb on + strand, within Pf6N2E2_4504 at 5237.076 kb on - strand, within Pf6N2E2_4504 at 5237.135 kb on + strand, within Pf6N2E2_4504 at 5237.135 kb on + strand, within Pf6N2E2_4504 at 5237.136 kb on - strand, within Pf6N2E2_4504 at 5237.204 kb on + strand at 5237.204 kb on + strand at 5237.204 kb on + strand at 5237.204 kb on + strand at 5237.205 kb on - strand at 5237.205 kb on - strand at 5237.205 kb on - strand at 5237.205 kb on - strand at 5237.205 kb on - strand at 5237.239 kb on + strand at 5237.239 kb on + strand at 5237.240 kb on - strand at 5237.240 kb on - strand at 5237.324 kb on - strand at 5237.683 kb on - strand, within Pf6N2E2_4505 at 5237.694 kb on + strand, within Pf6N2E2_4505 at 5237.694 kb on + strand, within Pf6N2E2_4505 at 5237.694 kb on + strand, within Pf6N2E2_4505 at 5237.695 kb on - strand, within Pf6N2E2_4505 at 5237.695 kb on - strand, within Pf6N2E2_4505 at 5237.695 kb on - strand, within Pf6N2E2_4505 at 5237.695 kb on - strand, within Pf6N2E2_4505 at 5237.695 kb on - strand, within Pf6N2E2_4505 at 5237.745 kb on + strand, within Pf6N2E2_4505 at 5237.956 kb on - strand, within Pf6N2E2_4505 at 5238.031 kb on - strand at 5238.131 kb on - strand at 5238.217 kb on + strand, within Pf6N2E2_4506 at 5238.217 kb on + strand, within Pf6N2E2_4506 at 5238.218 kb on - strand, within Pf6N2E2_4506 at 5238.218 kb on - strand, within Pf6N2E2_4506 at 5238.218 kb on - strand, within Pf6N2E2_4506 at 5238.378 kb on + strand, within Pf6N2E2_4506 at 5238.378 kb on + strand, within Pf6N2E2_4506 at 5238.872 kb on + strand at 5238.872 kb on + strand at 5238.873 kb on - strand at 5238.873 kb on - strand at 5238.893 kb on + strand at 5238.894 kb on - strand at 5238.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,236,532 - Pf6N2E2_4504 0.36 -0.2 5,236,568 + Pf6N2E2_4504 0.39 -0.5 5,236,569 - Pf6N2E2_4504 0.39 -0.8 5,236,591 + Pf6N2E2_4504 0.41 -0.5 5,236,785 + Pf6N2E2_4504 0.58 +0.5 5,237,075 + Pf6N2E2_4504 0.83 +0.2 5,237,076 - Pf6N2E2_4504 0.83 -1.2 5,237,135 + Pf6N2E2_4504 0.88 -0.4 5,237,135 + Pf6N2E2_4504 0.88 -0.9 5,237,136 - Pf6N2E2_4504 0.88 +0.8 5,237,204 + +0.3 5,237,204 + +0.1 5,237,204 + +0.1 5,237,204 + +0.4 5,237,205 - -0.5 5,237,205 - -0.1 5,237,205 - +0.9 5,237,205 - +1.2 5,237,205 - +0.4 5,237,239 + -0.5 5,237,239 + +0.1 5,237,240 - -0.2 5,237,240 - +0.7 5,237,324 - -0.0 5,237,683 - Pf6N2E2_4505 0.52 -0.8 5,237,694 + Pf6N2E2_4505 0.53 -1.0 5,237,694 + Pf6N2E2_4505 0.53 -0.4 5,237,694 + Pf6N2E2_4505 0.53 -0.5 5,237,695 - Pf6N2E2_4505 0.53 -1.1 5,237,695 - Pf6N2E2_4505 0.53 -0.2 5,237,695 - Pf6N2E2_4505 0.53 -1.1 5,237,695 - Pf6N2E2_4505 0.53 +0.6 5,237,695 - Pf6N2E2_4505 0.53 -0.2 5,237,745 + Pf6N2E2_4505 0.60 -1.2 5,237,956 - Pf6N2E2_4505 0.87 +0.0 5,238,031 - +0.2 5,238,131 - -0.0 5,238,217 + Pf6N2E2_4506 0.20 +0.5 5,238,217 + Pf6N2E2_4506 0.20 -0.5 5,238,218 - Pf6N2E2_4506 0.20 -0.1 5,238,218 - Pf6N2E2_4506 0.20 +1.6 5,238,218 - Pf6N2E2_4506 0.20 +0.5 5,238,378 + Pf6N2E2_4506 0.40 +0.5 5,238,378 + Pf6N2E2_4506 0.40 +0.2 5,238,872 + -0.3 5,238,872 + -1.4 5,238,873 - +0.7 5,238,873 - +0.4 5,238,893 + -1.6 5,238,894 - +0.1 5,238,894 - -0.6
Or see this region's nucleotide sequence