Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_312

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_309 and Pf6N2E2_310 are separated by 2 nucleotidesPf6N2E2_310 and Pf6N2E2_311 are separated by 141 nucleotidesPf6N2E2_311 and Pf6N2E2_312 are separated by 80 nucleotidesPf6N2E2_312 and Pf6N2E2_313 are separated by 164 nucleotides Pf6N2E2_309 - FIG00957702: hypothetical protein, at 377,601 to 377,930 _309 Pf6N2E2_310 - hypothetical protein, at 377,933 to 378,193 _310 Pf6N2E2_311 - hypothetical protein, at 378,335 to 378,685 _311 Pf6N2E2_312 - Histone acetyltransferase HPA2 and related acetyltransferases, at 378,766 to 379,197 _312 Pf6N2E2_313 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 379,362 to 381,089 _313 Position (kb) 378 379 380Strain fitness (log2 ratio) -2 -1 0 1at 378.012 kb on + strand, within Pf6N2E2_310at 378.012 kb on + strand, within Pf6N2E2_310at 378.012 kb on + strand, within Pf6N2E2_310at 378.012 kb on + strand, within Pf6N2E2_310at 378.012 kb on + strand, within Pf6N2E2_310at 378.013 kb on - strand, within Pf6N2E2_310at 378.013 kb on - strand, within Pf6N2E2_310at 378.013 kb on - strand, within Pf6N2E2_310at 378.069 kb on + strand, within Pf6N2E2_310at 378.070 kb on - strand, within Pf6N2E2_310at 378.154 kb on - strand, within Pf6N2E2_310at 378.171 kb on + strandat 378.172 kb on - strandat 378.172 kb on - strandat 378.302 kb on + strandat 378.422 kb on + strand, within Pf6N2E2_311at 378.423 kb on - strand, within Pf6N2E2_311at 378.423 kb on - strand, within Pf6N2E2_311at 378.423 kb on - strand, within Pf6N2E2_311at 378.423 kb on - strand, within Pf6N2E2_311at 378.558 kb on - strand, within Pf6N2E2_311at 378.558 kb on - strand, within Pf6N2E2_311at 378.691 kb on + strandat 378.691 kb on + strandat 378.691 kb on + strandat 378.691 kb on + strandat 378.692 kb on - strandat 378.733 kb on + strandat 378.733 kb on + strandat 378.768 kb on - strandat 378.863 kb on + strand, within Pf6N2E2_312at 379.007 kb on + strand, within Pf6N2E2_312at 379.007 kb on + strand, within Pf6N2E2_312at 379.007 kb on + strand, within Pf6N2E2_312at 379.007 kb on + strand, within Pf6N2E2_312at 379.008 kb on - strand, within Pf6N2E2_312at 379.008 kb on - strand, within Pf6N2E2_312at 379.008 kb on - strand, within Pf6N2E2_312at 379.120 kb on - strand, within Pf6N2E2_312at 379.120 kb on - strand, within Pf6N2E2_312at 379.121 kb on + strand, within Pf6N2E2_312at 379.121 kb on + strand, within Pf6N2E2_312at 379.122 kb on - strand, within Pf6N2E2_312at 379.189 kb on + strandat 379.210 kb on + strandat 379.290 kb on - strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.308 kb on + strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.309 kb on - strandat 379.312 kb on + strandat 379.312 kb on + strandat 379.313 kb on - strandat 379.313 kb on - strandat 379.313 kb on - strandat 379.422 kb on + strandat 379.422 kb on + strandat 379.422 kb on + strandat 379.422 kb on + strandat 379.422 kb on + strandat 379.423 kb on - strandat 379.423 kb on - strandat 379.423 kb on - strandat 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.695 kb on + strand, within Pf6N2E2_313at 379.696 kb on - strand, within Pf6N2E2_313at 379.696 kb on - strand, within Pf6N2E2_313at 379.696 kb on - strand, within Pf6N2E2_313at 379.696 kb on - strand, within Pf6N2E2_313at 379.696 kb on - strand, within Pf6N2E2_313at 379.696 kb on - strand, within Pf6N2E2_313at 379.800 kb on + strand, within Pf6N2E2_313at 379.800 kb on + strand, within Pf6N2E2_313at 380.046 kb on + strand, within Pf6N2E2_313at 380.046 kb on + strand, within Pf6N2E2_313at 380.046 kb on + strand, within Pf6N2E2_313at 380.047 kb on - strand, within Pf6N2E2_313at 380.047 kb on - strand, within Pf6N2E2_313at 380.047 kb on - strand, within Pf6N2E2_313at 380.047 kb on - strand, within Pf6N2E2_313at 380.047 kb on - strand, within Pf6N2E2_313at 380.127 kb on + strand, within Pf6N2E2_313at 380.127 kb on + strand, within Pf6N2E2_313at 380.127 kb on + strand, within Pf6N2E2_313at 380.127 kb on + strand, within Pf6N2E2_313at 380.127 kb on + strand, within Pf6N2E2_313at 380.128 kb on - strand, within Pf6N2E2_313at 380.163 kb on + strand, within Pf6N2E2_313

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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378,012 + Pf6N2E2_310 0.30 -0.2
378,012 + Pf6N2E2_310 0.30 -0.6
378,012 + Pf6N2E2_310 0.30 -0.5
378,012 + Pf6N2E2_310 0.30 +0.1
378,012 + Pf6N2E2_310 0.30 -0.1
378,013 - Pf6N2E2_310 0.31 +0.5
378,013 - Pf6N2E2_310 0.31 +0.2
378,013 - Pf6N2E2_310 0.31 +0.4
378,069 + Pf6N2E2_310 0.52 -0.7
378,070 - Pf6N2E2_310 0.52 -0.3
378,154 - Pf6N2E2_310 0.85 -0.4
378,171 + +0.3
378,172 - +0.0
378,172 - -1.4
378,302 + -0.1
378,422 + Pf6N2E2_311 0.25 -0.8
378,423 - Pf6N2E2_311 0.25 +0.2
378,423 - Pf6N2E2_311 0.25 -0.4
378,423 - Pf6N2E2_311 0.25 -0.6
378,423 - Pf6N2E2_311 0.25 -0.0
378,558 - Pf6N2E2_311 0.64 +0.7
378,558 - Pf6N2E2_311 0.64 +0.1
378,691 + -0.4
378,691 + -0.5
378,691 + -0.8
378,691 + +0.5
378,692 - -0.3
378,733 + +1.1
378,733 + -0.6
378,768 - +1.6
378,863 + Pf6N2E2_312 0.22 -0.4
379,007 + Pf6N2E2_312 0.56 +0.2
379,007 + Pf6N2E2_312 0.56 -0.1
379,007 + Pf6N2E2_312 0.56 -0.6
379,007 + Pf6N2E2_312 0.56 -0.2
379,008 - Pf6N2E2_312 0.56 -0.3
379,008 - Pf6N2E2_312 0.56 -0.3
379,008 - Pf6N2E2_312 0.56 -0.4
379,120 - Pf6N2E2_312 0.82 -0.5
379,120 - Pf6N2E2_312 0.82 -0.8
379,121 + Pf6N2E2_312 0.82 +0.2
379,121 + Pf6N2E2_312 0.82 +0.5
379,122 - Pf6N2E2_312 0.82 -0.4
379,189 + +0.5
379,210 + +0.3
379,290 - +0.7
379,308 + -0.8
379,308 + +0.7
379,308 + +0.3
379,308 + +0.3
379,308 + -0.2
379,308 + +0.6
379,308 + +1.3
379,308 + -0.0
379,308 + +0.6
379,309 - +0.4
379,309 - -0.4
379,309 - +0.4
379,309 - +0.0
379,309 - -0.3
379,309 - +0.0
379,309 - -1.4
379,309 - -0.3
379,309 - -2.2
379,309 - -0.6
379,312 + +0.2
379,312 + -0.6
379,313 - -0.5
379,313 - -0.5
379,313 - -0.7
379,422 + +1.2
379,422 + +1.0
379,422 + +0.3
379,422 + -0.9
379,422 + -0.7
379,423 - -0.5
379,423 - +0.2
379,423 - +0.2
379,695 + Pf6N2E2_313 0.19 +0.4
379,695 + Pf6N2E2_313 0.19 -0.7
379,695 + Pf6N2E2_313 0.19 -0.5
379,695 + Pf6N2E2_313 0.19 -1.5
379,695 + Pf6N2E2_313 0.19 -0.5
379,695 + Pf6N2E2_313 0.19 +0.3
379,695 + Pf6N2E2_313 0.19 +0.3
379,695 + Pf6N2E2_313 0.19 +0.0
379,695 + Pf6N2E2_313 0.19 +0.2
379,695 + Pf6N2E2_313 0.19 +1.3
379,696 - Pf6N2E2_313 0.19 -1.3
379,696 - Pf6N2E2_313 0.19 -1.3
379,696 - Pf6N2E2_313 0.19 +0.6
379,696 - Pf6N2E2_313 0.19 +0.5
379,696 - Pf6N2E2_313 0.19 -0.0
379,696 - Pf6N2E2_313 0.19 -0.2
379,800 + Pf6N2E2_313 0.25 -0.7
379,800 + Pf6N2E2_313 0.25 -1.0
380,046 + Pf6N2E2_313 0.40 -0.0
380,046 + Pf6N2E2_313 0.40 +0.3
380,046 + Pf6N2E2_313 0.40 +0.7
380,047 - Pf6N2E2_313 0.40 +0.6
380,047 - Pf6N2E2_313 0.40 +0.2
380,047 - Pf6N2E2_313 0.40 -0.1
380,047 - Pf6N2E2_313 0.40 +0.1
380,047 - Pf6N2E2_313 0.40 +0.3
380,127 + Pf6N2E2_313 0.44 -0.0
380,127 + Pf6N2E2_313 0.44 -0.5
380,127 + Pf6N2E2_313 0.44 -0.4
380,127 + Pf6N2E2_313 0.44 +0.0
380,127 + Pf6N2E2_313 0.44 -1.0
380,128 - Pf6N2E2_313 0.44 -0.0
380,163 + Pf6N2E2_313 0.46 +0.2

Or see this region's nucleotide sequence