Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03170

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS09045 and MMP_RS03170 are separated by 120 nucleotidesMMP_RS03170 and MMP_RS03175 are separated by 144 nucleotidesMMP_RS03175 and MMP_RS03180 are separated by 8 nucleotides MMP_RS09045: MMP_RS09045 - class III signal peptide-containing protein, at 597,015 to 597,902 _RS09045 MMP_RS03170: MMP_RS03170 - orotidine-5'-phosphate decarboxylase, at 598,023 to 598,676 _RS03170 MMP_RS03175: MMP_RS03175 - translation initiation factor eIF-1A, at 598,821 to 599,135 _RS03175 MMP_RS03180: MMP_RS03180 - serine protein kinase RIO, at 599,144 to 599,965 _RS03180 Position (kb) 598 599Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 597.038 kb on - strandat 597.042 kb on + strandat 597.043 kb on - strandat 597.043 kb on - strandat 597.080 kb on - strandat 597.080 kb on - strandat 597.108 kb on - strand, within MMP_RS09045at 597.115 kb on - strand, within MMP_RS09045at 597.147 kb on + strand, within MMP_RS09045at 597.197 kb on + strand, within MMP_RS09045at 597.197 kb on + strand, within MMP_RS09045at 597.209 kb on + strand, within MMP_RS09045at 597.209 kb on + strand, within MMP_RS09045at 597.227 kb on - strand, within MMP_RS09045at 597.227 kb on - strand, within MMP_RS09045at 597.228 kb on + strand, within MMP_RS09045at 597.250 kb on - strand, within MMP_RS09045at 597.266 kb on - strand, within MMP_RS09045at 597.328 kb on - strand, within MMP_RS09045at 597.344 kb on - strand, within MMP_RS09045at 597.345 kb on + strand, within MMP_RS09045at 597.505 kb on + strand, within MMP_RS09045at 597.514 kb on + strand, within MMP_RS09045at 597.569 kb on - strand, within MMP_RS09045at 597.593 kb on - strand, within MMP_RS09045at 597.593 kb on - strand, within MMP_RS09045at 597.593 kb on - strand, within MMP_RS09045at 597.593 kb on - strand, within MMP_RS09045at 597.609 kb on + strand, within MMP_RS09045at 597.611 kb on - strand, within MMP_RS09045at 597.612 kb on + strand, within MMP_RS09045at 597.612 kb on + strand, within MMP_RS09045at 597.626 kb on - strand, within MMP_RS09045at 597.626 kb on - strand, within MMP_RS09045at 597.627 kb on + strand, within MMP_RS09045at 597.629 kb on - strand, within MMP_RS09045at 597.629 kb on - strand, within MMP_RS09045at 597.644 kb on - strand, within MMP_RS09045at 597.645 kb on + strand, within MMP_RS09045at 597.662 kb on - strand, within MMP_RS09045at 597.666 kb on + strand, within MMP_RS09045at 597.680 kb on - strand, within MMP_RS09045at 597.681 kb on + strand, within MMP_RS09045at 597.797 kb on - strand, within MMP_RS09045at 597.840 kb on - strandat 597.855 kb on - strandat 597.855 kb on - strandat 597.902 kb on - strandat 597.902 kb on - strandat 597.903 kb on + strandat 597.903 kb on + strandat 597.906 kb on - strandat 597.920 kb on + strandat 597.958 kb on - strandat 597.965 kb on + strandat 597.965 kb on + strandat 597.965 kb on + strandat 597.965 kb on + strandat 597.966 kb on - strandat 597.966 kb on - strandat 597.967 kb on + strandat 597.969 kb on + strandat 597.982 kb on + strandat 598.013 kb on - strandat 598.014 kb on + strandat 598.024 kb on - strandat 598.025 kb on + strandat 598.411 kb on + strandat 598.533 kb on + strandat 598.677 kb on + strandat 598.689 kb on + strandat 598.863 kb on + strandat 599.116 kb on + strandat 599.499 kb on - strandat 599.527 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE
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597,038 - +0.7
597,042 + +0.9
597,043 - +1.6
597,043 - +1.8
597,080 - +3.1
597,080 - +2.9
597,108 - MMP_RS09045 0.10 +0.8
597,115 - MMP_RS09045 0.11 +1.4
597,147 + MMP_RS09045 0.15 +0.8
597,197 + MMP_RS09045 0.20 +1.8
597,197 + MMP_RS09045 0.20 +0.9
597,209 + MMP_RS09045 0.22 +1.1
597,209 + MMP_RS09045 0.22 +1.6
597,227 - MMP_RS09045 0.24 +1.9
597,227 - MMP_RS09045 0.24 +1.5
597,228 + MMP_RS09045 0.24 +1.4
597,250 - MMP_RS09045 0.26 +2.0
597,266 - MMP_RS09045 0.28 +1.1
597,328 - MMP_RS09045 0.35 +1.4
597,344 - MMP_RS09045 0.37 +1.7
597,345 + MMP_RS09045 0.37 +1.6
597,505 + MMP_RS09045 0.55 +2.8
597,514 + MMP_RS09045 0.56 +1.0
597,569 - MMP_RS09045 0.62 +3.0
597,593 - MMP_RS09045 0.65 +3.7
597,593 - MMP_RS09045 0.65 +3.1
597,593 - MMP_RS09045 0.65 +2.5
597,593 - MMP_RS09045 0.65 +3.4
597,609 + MMP_RS09045 0.67 +3.5
597,611 - MMP_RS09045 0.67 +3.4
597,612 + MMP_RS09045 0.67 +2.7
597,612 + MMP_RS09045 0.67 +2.9
597,626 - MMP_RS09045 0.69 +3.2
597,626 - MMP_RS09045 0.69 +3.2
597,627 + MMP_RS09045 0.69 +3.0
597,629 - MMP_RS09045 0.69 +2.8
597,629 - MMP_RS09045 0.69 +2.6
597,644 - MMP_RS09045 0.71 +3.6
597,645 + MMP_RS09045 0.71 +3.3
597,662 - MMP_RS09045 0.73 +2.9
597,666 + MMP_RS09045 0.73 +3.3
597,680 - MMP_RS09045 0.75 +2.3
597,681 + MMP_RS09045 0.75 +3.1
597,797 - MMP_RS09045 0.88 +3.4
597,840 - +3.2
597,855 - +2.8
597,855 - +3.3
597,902 - +2.9
597,902 - +2.8
597,903 + +3.1
597,903 + +3.0
597,906 - +3.4
597,920 + +3.1
597,958 - +2.5
597,965 + +3.4
597,965 + +3.1
597,965 + +3.2
597,965 + +3.3
597,966 - +2.6
597,966 - +2.1
597,967 + +2.7
597,969 + +2.0
597,982 + +3.1
598,013 - +0.7
598,014 + +3.0
598,024 - +3.3
598,025 + +0.0
598,411 + -2.4
598,533 + -3.6
598,677 + -3.1
598,689 + -2.0
598,863 + -3.0
599,116 + -3.2
599,499 - -2.7
599,527 - -2.6

Or see this region's nucleotide sequence