Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03909

Experiment: PYE with Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03469 and CCNA_03909 overlap by 4 nucleotidesCCNA_03909 and CCNA_03471 are separated by 141 nucleotides CCNA_03469: CCNA_03469 - arginyl-tRNA synthetase, at 3,635,003 to 3,636,805 _03469 CCNA_03909: CCNA_03909 - hypothetical protein, at 3,636,802 to 3,637,524 _03909 CCNA_03471: CCNA_03471 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,637,666 to 3,638,625 _03471 Position (kb) 3636 3637 3638Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3636.829 kb on + strandat 3636.837 kb on - strandat 3636.837 kb on - strandat 3636.844 kb on + strandat 3636.847 kb on - strandat 3636.849 kb on + strandat 3636.852 kb on - strandat 3636.853 kb on - strandat 3636.857 kb on - strandat 3636.873 kb on + strandat 3636.881 kb on - strand, within CCNA_03909at 3636.886 kb on - strand, within CCNA_03909at 3636.941 kb on - strand, within CCNA_03909at 3636.941 kb on - strand, within CCNA_03909at 3636.973 kb on - strand, within CCNA_03909at 3637.104 kb on + strand, within CCNA_03909at 3637.168 kb on - strand, within CCNA_03909at 3637.168 kb on - strand, within CCNA_03909at 3637.168 kb on - strand, within CCNA_03909at 3637.224 kb on - strand, within CCNA_03909at 3637.236 kb on - strand, within CCNA_03909at 3637.322 kb on - strand, within CCNA_03909at 3637.322 kb on - strand, within CCNA_03909at 3637.337 kb on + strand, within CCNA_03909at 3637.361 kb on + strand, within CCNA_03909at 3637.369 kb on - strand, within CCNA_03909at 3637.369 kb on - strand, within CCNA_03909at 3637.584 kb on - strandat 3637.604 kb on - strandat 3637.634 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Cobalt chloride 0.08 mM
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3,636,829 + -0.2
3,636,837 - +0.1
3,636,837 - +0.7
3,636,844 + +0.4
3,636,847 - +0.9
3,636,849 + -0.3
3,636,852 - +0.3
3,636,853 - -0.1
3,636,857 - +0.1
3,636,873 + +0.5
3,636,881 - CCNA_03909 0.11 +0.2
3,636,886 - CCNA_03909 0.12 +0.8
3,636,941 - CCNA_03909 0.19 +2.8
3,636,941 - CCNA_03909 0.19 +3.1
3,636,973 - CCNA_03909 0.24 +5.8
3,637,104 + CCNA_03909 0.42 -1.0
3,637,168 - CCNA_03909 0.51 +3.2
3,637,168 - CCNA_03909 0.51 -1.9
3,637,168 - CCNA_03909 0.51 +4.3
3,637,224 - CCNA_03909 0.58 +3.6
3,637,236 - CCNA_03909 0.60 -0.2
3,637,322 - CCNA_03909 0.72 +3.3
3,637,322 - CCNA_03909 0.72 +2.5
3,637,337 + CCNA_03909 0.74 +0.4
3,637,361 + CCNA_03909 0.77 -0.0
3,637,369 - CCNA_03909 0.78 +4.0
3,637,369 - CCNA_03909 0.78 +2.6
3,637,584 - +2.2
3,637,604 - -0.5
3,637,634 - -0.5

Or see this region's nucleotide sequence