Experiment: PYE with Cobalt chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_R0057 and CCNA_02419 are separated by 128 nucleotides CCNA_02419 and CCNA_02420 are separated by 10 nucleotides CCNA_02420 and CCNA_02421 are separated by 5 nucleotides
CCNA_R0057: CCNA_R0057 - tRNA-His, at 2,563,345 to 2,563,421
_R0057
CCNA_02419: CCNA_02419 - TonB1 protein, at 2,563,550 to 2,564,281
_02419
CCNA_02420: CCNA_02420 - TonB accessory protein exbD, at 2,564,292 to 2,564,726
_02420
CCNA_02421: CCNA_02421 - TonB accessory protein exbB, at 2,564,732 to 2,565,640
_02421
Position (kb)
2564
2565 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2563.541 kb on + strand at 2563.601 kb on - strand at 2563.625 kb on - strand, within CCNA_02419 at 2563.637 kb on - strand, within CCNA_02419 at 2563.706 kb on + strand, within CCNA_02419 at 2563.714 kb on - strand, within CCNA_02419 at 2563.718 kb on + strand, within CCNA_02419 at 2563.726 kb on - strand, within CCNA_02419 at 2563.734 kb on + strand, within CCNA_02419 at 2563.780 kb on + strand, within CCNA_02419 at 2563.785 kb on + strand, within CCNA_02419 at 2563.793 kb on - strand, within CCNA_02419 at 2563.802 kb on + strand, within CCNA_02419 at 2563.810 kb on - strand, within CCNA_02419 at 2563.895 kb on - strand, within CCNA_02419 at 2564.081 kb on + strand, within CCNA_02419 at 2564.235 kb on - strand at 2564.303 kb on + strand at 2564.308 kb on + strand at 2564.668 kb on + strand, within CCNA_02420 at 2565.640 kb on + strand at 2565.661 kb on + strand at 2565.706 kb on + strand at 2565.711 kb on + strand at 2565.711 kb on + strand at 2565.711 kb on + strand at 2565.711 kb on + strand at 2565.719 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Cobalt chloride 0.08 mM remove 2,563,541 + -1.6 2,563,601 - -2.9 2,563,625 - CCNA_02419 0.10 -3.2 2,563,637 - CCNA_02419 0.12 -3.0 2,563,706 + CCNA_02419 0.21 -2.4 2,563,714 - CCNA_02419 0.22 -2.4 2,563,718 + CCNA_02419 0.23 -0.2 2,563,726 - CCNA_02419 0.24 -3.1 2,563,734 + CCNA_02419 0.25 -0.7 2,563,780 + CCNA_02419 0.31 +0.2 2,563,785 + CCNA_02419 0.32 -1.0 2,563,793 - CCNA_02419 0.33 -0.6 2,563,802 + CCNA_02419 0.34 -1.5 2,563,810 - CCNA_02419 0.36 -2.4 2,563,895 - CCNA_02419 0.47 -1.9 2,564,081 + CCNA_02419 0.73 -1.2 2,564,235 - -2.2 2,564,303 + -1.3 2,564,308 + -1.9 2,564,668 + CCNA_02420 0.86 -0.3 2,565,640 + -3.3 2,565,661 + -1.6 2,565,706 + -0.5 2,565,711 + -0.2 2,565,711 + +0.7 2,565,711 + -0.9 2,565,711 + -2.9 2,565,719 - -3.9
Or see this region's nucleotide sequence