Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01927

Experiment: PYE with Cobalt chloride 0.08 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01926 and CCNA_01927 are separated by 136 nucleotidesCCNA_01927 and CCNA_01928 overlap by 14 nucleotidesCCNA_01928 and CCNA_01929 overlap by 4 nucleotidesCCNA_01929 and CCNA_01930 are separated by 0 nucleotides CCNA_01926: CCNA_01926 - GGDEF diguanylate cyclase DgcB, at 2,072,620 to 2,073,681 _01926 CCNA_01927: CCNA_01927 - enoyl-CoA hydratase, at 2,073,818 to 2,074,621 _01927 CCNA_01928: CCNA_01928 - conserved ACT domain protein, at 2,074,608 to 2,075,018 _01928 CCNA_01929: CCNA_01929 - hypothetical protein, at 2,075,015 to 2,075,419 _01929 CCNA_01930: CCNA_01930 - ADP-heptose LPS heptosyltransferase, at 2,075,420 to 2,076,391 _01930 Position (kb) 2073 2074 2075Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2072.828 kb on - strand, within CCNA_01926at 2072.898 kb on + strand, within CCNA_01926at 2072.931 kb on + strand, within CCNA_01926at 2072.946 kb on - strand, within CCNA_01926at 2072.968 kb on + strand, within CCNA_01926at 2072.991 kb on + strand, within CCNA_01926at 2073.133 kb on + strand, within CCNA_01926at 2073.141 kb on - strand, within CCNA_01926at 2073.141 kb on - strand, within CCNA_01926at 2073.145 kb on + strand, within CCNA_01926at 2073.204 kb on - strand, within CCNA_01926at 2073.282 kb on + strand, within CCNA_01926at 2073.282 kb on + strand, within CCNA_01926at 2073.290 kb on - strand, within CCNA_01926at 2073.349 kb on + strand, within CCNA_01926at 2073.349 kb on + strand, within CCNA_01926at 2073.357 kb on - strand, within CCNA_01926at 2073.413 kb on - strand, within CCNA_01926at 2073.534 kb on + strand, within CCNA_01926at 2073.536 kb on + strand, within CCNA_01926at 2073.536 kb on + strand, within CCNA_01926at 2073.542 kb on - strand, within CCNA_01926at 2073.651 kb on + strandat 2073.651 kb on + strandat 2073.659 kb on - strandat 2073.681 kb on + strandat 2073.681 kb on + strandat 2073.689 kb on - strandat 2073.769 kb on + strandat 2073.769 kb on + strandat 2073.777 kb on - strandat 2073.795 kb on + strandat 2073.823 kb on - strandat 2073.823 kb on - strandat 2073.903 kb on + strand, within CCNA_01927at 2073.911 kb on - strand, within CCNA_01927at 2073.911 kb on - strand, within CCNA_01927at 2073.980 kb on - strand, within CCNA_01927at 2073.986 kb on + strand, within CCNA_01927at 2073.994 kb on - strand, within CCNA_01927at 2074.084 kb on + strand, within CCNA_01927at 2074.092 kb on - strand, within CCNA_01927at 2074.190 kb on - strand, within CCNA_01927at 2074.307 kb on + strand, within CCNA_01927at 2074.361 kb on + strand, within CCNA_01927at 2074.489 kb on + strand, within CCNA_01927at 2074.532 kb on + strand, within CCNA_01927at 2074.532 kb on + strand, within CCNA_01927at 2074.533 kb on - strand, within CCNA_01927at 2074.540 kb on - strand, within CCNA_01927at 2074.540 kb on - strand, within CCNA_01927at 2074.577 kb on + strandat 2074.581 kb on - strandat 2074.594 kb on - strandat 2074.614 kb on - strandat 2074.655 kb on - strand, within CCNA_01928at 2074.660 kb on + strand, within CCNA_01928at 2074.761 kb on + strand, within CCNA_01928at 2074.761 kb on + strand, within CCNA_01928at 2074.761 kb on + strand, within CCNA_01928at 2074.769 kb on - strand, within CCNA_01928at 2074.793 kb on + strand, within CCNA_01928at 2074.793 kb on + strand, within CCNA_01928at 2074.802 kb on - strand, within CCNA_01928at 2074.803 kb on + strand, within CCNA_01928at 2074.871 kb on - strand, within CCNA_01928at 2074.876 kb on - strand, within CCNA_01928at 2075.042 kb on - strandat 2075.073 kb on - strand, within CCNA_01929at 2075.073 kb on - strand, within CCNA_01929at 2075.176 kb on + strand, within CCNA_01929at 2075.233 kb on + strand, within CCNA_01929at 2075.254 kb on + strand, within CCNA_01929at 2075.261 kb on - strand, within CCNA_01929at 2075.261 kb on - strand, within CCNA_01929at 2075.281 kb on - strand, within CCNA_01929at 2075.297 kb on - strand, within CCNA_01929at 2075.297 kb on - strand, within CCNA_01929at 2075.352 kb on + strand, within CCNA_01929at 2075.360 kb on - strand, within CCNA_01929at 2075.443 kb on - strandat 2075.453 kb on + strandat 2075.454 kb on + strandat 2075.461 kb on - strandat 2075.481 kb on + strandat 2075.501 kb on - strandat 2075.548 kb on - strand, within CCNA_01930at 2075.551 kb on - strand, within CCNA_01930at 2075.595 kb on + strand, within CCNA_01930at 2075.613 kb on + strand, within CCNA_01930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Cobalt chloride 0.08 mM
remove
2,072,828 - CCNA_01926 0.20 -0.2
2,072,898 + CCNA_01926 0.26 +0.3
2,072,931 + CCNA_01926 0.29 -0.4
2,072,946 - CCNA_01926 0.31 -1.3
2,072,968 + CCNA_01926 0.33 -0.8
2,072,991 + CCNA_01926 0.35 -1.9
2,073,133 + CCNA_01926 0.48 +1.4
2,073,141 - CCNA_01926 0.49 +0.2
2,073,141 - CCNA_01926 0.49 +1.1
2,073,145 + CCNA_01926 0.49 -0.6
2,073,204 - CCNA_01926 0.55 -1.6
2,073,282 + CCNA_01926 0.62 -0.2
2,073,282 + CCNA_01926 0.62 +0.1
2,073,290 - CCNA_01926 0.63 -0.6
2,073,349 + CCNA_01926 0.69 -0.2
2,073,349 + CCNA_01926 0.69 +0.4
2,073,357 - CCNA_01926 0.69 +0.7
2,073,413 - CCNA_01926 0.75 -1.5
2,073,534 + CCNA_01926 0.86 -0.1
2,073,536 + CCNA_01926 0.86 +0.8
2,073,536 + CCNA_01926 0.86 +0.2
2,073,542 - CCNA_01926 0.87 +2.1
2,073,651 + +0.2
2,073,651 + +0.0
2,073,659 - +2.3
2,073,681 + +0.7
2,073,681 + +0.9
2,073,689 - -0.5
2,073,769 + +1.3
2,073,769 + +0.5
2,073,777 - -1.5
2,073,795 + -0.8
2,073,823 - -0.1
2,073,823 - +1.1
2,073,903 + CCNA_01927 0.11 +1.0
2,073,911 - CCNA_01927 0.12 +0.5
2,073,911 - CCNA_01927 0.12 +1.5
2,073,980 - CCNA_01927 0.20 +0.6
2,073,986 + CCNA_01927 0.21 -0.5
2,073,994 - CCNA_01927 0.22 +1.0
2,074,084 + CCNA_01927 0.33 -0.4
2,074,092 - CCNA_01927 0.34 +0.4
2,074,190 - CCNA_01927 0.46 -1.2
2,074,307 + CCNA_01927 0.61 +0.1
2,074,361 + CCNA_01927 0.68 -0.7
2,074,489 + CCNA_01927 0.83 +0.1
2,074,532 + CCNA_01927 0.89 +1.3
2,074,532 + CCNA_01927 0.89 +0.3
2,074,533 - CCNA_01927 0.89 +1.0
2,074,540 - CCNA_01927 0.90 +0.3
2,074,540 - CCNA_01927 0.90 +1.6
2,074,577 + +2.2
2,074,581 - -0.8
2,074,594 - -3.1
2,074,614 - -0.4
2,074,655 - CCNA_01928 0.11 +1.3
2,074,660 + CCNA_01928 0.13 -0.9
2,074,761 + CCNA_01928 0.37 +2.0
2,074,761 + CCNA_01928 0.37 -0.8
2,074,761 + CCNA_01928 0.37 -0.9
2,074,769 - CCNA_01928 0.39 -1.2
2,074,793 + CCNA_01928 0.45 +0.6
2,074,793 + CCNA_01928 0.45 +1.1
2,074,802 - CCNA_01928 0.47 -0.3
2,074,803 + CCNA_01928 0.47 -0.8
2,074,871 - CCNA_01928 0.64 -0.4
2,074,876 - CCNA_01928 0.65 -0.9
2,075,042 - -0.9
2,075,073 - CCNA_01929 0.14 +1.1
2,075,073 - CCNA_01929 0.14 +0.5
2,075,176 + CCNA_01929 0.40 -2.1
2,075,233 + CCNA_01929 0.54 -0.7
2,075,254 + CCNA_01929 0.59 +0.9
2,075,261 - CCNA_01929 0.61 -1.1
2,075,261 - CCNA_01929 0.61 -2.0
2,075,281 - CCNA_01929 0.66 +1.2
2,075,297 - CCNA_01929 0.70 -0.5
2,075,297 - CCNA_01929 0.70 -1.9
2,075,352 + CCNA_01929 0.83 +0.4
2,075,360 - CCNA_01929 0.85 +1.0
2,075,443 - -0.9
2,075,453 + -0.2
2,075,454 + +1.1
2,075,461 - +2.5
2,075,481 + +0.0
2,075,501 - -1.0
2,075,548 - CCNA_01930 0.13 -1.1
2,075,551 - CCNA_01930 0.13 +1.3
2,075,595 + CCNA_01930 0.18 +0.9
2,075,613 + CCNA_01930 0.20 -0.7

Or see this region's nucleotide sequence