Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00231

Experiment: PYE with Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00230 and CCNA_00231 are separated by 51 nucleotidesCCNA_00231 and CCNA_00232 overlap by 4 nucleotidesCCNA_00232 and CCNA_00233 are separated by 128 nucleotides CCNA_00230: CCNA_00230 - ribosomal large subunit pseudouridine synthase B, at 245,765 to 247,003 _00230 CCNA_00231: CCNA_00231 - tRNA-specific adenosine deaminase, at 247,055 to 247,540 _00231 CCNA_00232: CCNA_00232 - hypothetical protein, at 247,537 to 247,953 _00232 CCNA_00233: CCNA_00233 - UDP-N-acetylglucosamine 4,6-dehydratase, at 248,082 to 249,119 _00233 Position (kb) 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 246.058 kb on + strand, within CCNA_00230at 246.066 kb on - strand, within CCNA_00230at 246.066 kb on - strand, within CCNA_00230at 246.074 kb on - strand, within CCNA_00230at 246.168 kb on + strand, within CCNA_00230at 246.176 kb on - strandat 246.176 kb on - strand, within CCNA_00230at 246.202 kb on - strand, within CCNA_00230at 246.213 kb on + strand, within CCNA_00230at 246.213 kb on + strand, within CCNA_00230at 246.213 kb on + strand, within CCNA_00230at 246.213 kb on - strand, within CCNA_00230at 246.257 kb on - strand, within CCNA_00230at 246.280 kb on + strand, within CCNA_00230at 246.309 kb on + strand, within CCNA_00230at 246.319 kb on + strand, within CCNA_00230at 246.327 kb on - strand, within CCNA_00230at 246.343 kb on - strand, within CCNA_00230at 246.359 kb on + strand, within CCNA_00230at 246.374 kb on - strand, within CCNA_00230at 246.376 kb on + strand, within CCNA_00230at 246.384 kb on - strand, within CCNA_00230at 246.427 kb on + strand, within CCNA_00230at 246.448 kb on + strand, within CCNA_00230at 246.448 kb on + strand, within CCNA_00230at 246.495 kb on + strand, within CCNA_00230at 246.495 kb on + strand, within CCNA_00230at 246.500 kb on + strand, within CCNA_00230at 246.503 kb on - strand, within CCNA_00230at 246.503 kb on - strand, within CCNA_00230at 246.508 kb on - strand, within CCNA_00230at 246.508 kb on - strand, within CCNA_00230at 246.508 kb on - strand, within CCNA_00230at 246.551 kb on - strand, within CCNA_00230at 246.562 kb on + strand, within CCNA_00230at 246.562 kb on + strand, within CCNA_00230at 246.570 kb on - strand, within CCNA_00230at 246.570 kb on - strand, within CCNA_00230at 246.601 kb on + strand, within CCNA_00230at 246.609 kb on + strand, within CCNA_00230at 246.609 kb on + strand, within CCNA_00230at 246.617 kb on + strand, within CCNA_00230at 246.625 kb on - strand, within CCNA_00230at 246.657 kb on + strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.727 kb on + strand, within CCNA_00230at 246.735 kb on - strand, within CCNA_00230at 246.765 kb on + strand, within CCNA_00230at 246.786 kb on - strand, within CCNA_00230at 246.824 kb on + strand, within CCNA_00230at 246.832 kb on - strand, within CCNA_00230at 246.858 kb on + strand, within CCNA_00230at 246.866 kb on - strand, within CCNA_00230at 246.866 kb on - strand, within CCNA_00230at 246.884 kb on - strandat 246.905 kb on + strandat 246.913 kb on - strandat 246.936 kb on - strandat 246.960 kb on + strandat 246.977 kb on + strandat 246.980 kb on - strandat 247.018 kb on + strandat 247.021 kb on - strandat 247.021 kb on - strandat 247.021 kb on - strandat 247.040 kb on + strandat 247.072 kb on - strandat 247.076 kb on + strandat 247.084 kb on - strandat 247.084 kb on - strandat 247.522 kb on + strandat 247.522 kb on + strandat 247.530 kb on - strandat 247.558 kb on + strandat 247.582 kb on + strand, within CCNA_00232at 247.587 kb on + strand, within CCNA_00232at 247.587 kb on + strand, within CCNA_00232at 247.595 kb on - strand, within CCNA_00232at 247.609 kb on - strand, within CCNA_00232at 247.633 kb on + strand, within CCNA_00232at 247.654 kb on - strand, within CCNA_00232at 247.656 kb on + strand, within CCNA_00232at 247.659 kb on - strand, within CCNA_00232at 247.664 kb on - strand, within CCNA_00232at 247.664 kb on - strand, within CCNA_00232at 247.664 kb on - strand, within CCNA_00232at 247.672 kb on - strand, within CCNA_00232at 247.673 kb on + strand, within CCNA_00232at 247.686 kb on - strand, within CCNA_00232at 247.692 kb on - strand, within CCNA_00232at 247.709 kb on + strand, within CCNA_00232at 247.709 kb on + strand, within CCNA_00232at 247.715 kb on + strand, within CCNA_00232at 247.717 kb on - strand, within CCNA_00232at 247.722 kb on - strand, within CCNA_00232at 247.732 kb on - strand, within CCNA_00232at 247.750 kb on + strand, within CCNA_00232at 247.750 kb on + strand, within CCNA_00232at 247.758 kb on - strand, within CCNA_00232at 247.758 kb on - strand, within CCNA_00232at 247.759 kb on + strand, within CCNA_00232at 247.808 kb on + strand, within CCNA_00232at 247.816 kb on - strand, within CCNA_00232at 247.816 kb on - strand, within CCNA_00232at 247.824 kb on + strand, within CCNA_00232at 247.850 kb on - strand, within CCNA_00232at 247.864 kb on - strand, within CCNA_00232at 247.864 kb on - strand, within CCNA_00232at 247.864 kb on - strand, within CCNA_00232at 247.889 kb on - strand, within CCNA_00232at 247.975 kb on + strandat 247.994 kb on - strandat 247.994 kb on - strandat 248.037 kb on + strandat 248.072 kb on - strandat 248.074 kb on + strandat 248.109 kb on + strandat 248.122 kb on + strandat 248.122 kb on + strandat 248.135 kb on - strandat 248.147 kb on + strandat 248.162 kb on + strandat 248.213 kb on - strand, within CCNA_00233at 248.227 kb on + strand, within CCNA_00233at 248.227 kb on + strand, within CCNA_00233at 248.235 kb on - strand, within CCNA_00233at 248.256 kb on - strand, within CCNA_00233at 248.256 kb on - strand, within CCNA_00233at 248.267 kb on + strand, within CCNA_00233at 248.275 kb on + strand, within CCNA_00233at 248.335 kb on + strand, within CCNA_00233at 248.335 kb on + strand, within CCNA_00233at 248.336 kb on - strand, within CCNA_00233at 248.397 kb on + strand, within CCNA_00233at 248.402 kb on + strand, within CCNA_00233at 248.405 kb on - strand, within CCNA_00233at 248.407 kb on + strand, within CCNA_00233at 248.410 kb on - strandat 248.417 kb on - strand, within CCNA_00233at 248.417 kb on - strand, within CCNA_00233at 248.429 kb on - strand, within CCNA_00233at 248.436 kb on - strand, within CCNA_00233at 248.454 kb on + strand, within CCNA_00233at 248.454 kb on + strand, within CCNA_00233at 248.458 kb on + strand, within CCNA_00233at 248.461 kb on - strand, within CCNA_00233at 248.462 kb on - strand, within CCNA_00233at 248.462 kb on - strand, within CCNA_00233at 248.463 kb on + strand, within CCNA_00233at 248.476 kb on - strand, within CCNA_00233at 248.493 kb on + strand, within CCNA_00233at 248.493 kb on + strand, within CCNA_00233at 248.505 kb on + strand, within CCNA_00233at 248.506 kb on - strand, within CCNA_00233at 248.518 kb on - strand, within CCNA_00233at 248.526 kb on + strand, within CCNA_00233at 248.528 kb on + strand, within CCNA_00233at 248.528 kb on + strand, within CCNA_00233at 248.528 kb on + strand, within CCNA_00233at 248.536 kb on - strand, within CCNA_00233

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Cobalt chloride 0.08 mM
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246,058 + CCNA_00230 0.24 +0.4
246,066 - CCNA_00230 0.24 +0.8
246,066 - CCNA_00230 0.24 +0.1
246,074 - CCNA_00230 0.25 +1.5
246,168 + CCNA_00230 0.33 -1.1
246,176 - +0.4
246,176 - CCNA_00230 0.33 +0.7
246,202 - CCNA_00230 0.35 +0.4
246,213 + CCNA_00230 0.36 -0.7
246,213 + CCNA_00230 0.36 +0.1
246,213 + CCNA_00230 0.36 -0.2
246,213 - CCNA_00230 0.36 +1.2
246,257 - CCNA_00230 0.40 +1.1
246,280 + CCNA_00230 0.42 -1.7
246,309 + CCNA_00230 0.44 +0.7
246,319 + CCNA_00230 0.45 +2.6
246,327 - CCNA_00230 0.45 +1.6
246,343 - CCNA_00230 0.47 +0.4
246,359 + CCNA_00230 0.48 -2.0
246,374 - CCNA_00230 0.49 +0.4
246,376 + CCNA_00230 0.49 -0.3
246,384 - CCNA_00230 0.50 +1.2
246,427 + CCNA_00230 0.53 +2.0
246,448 + CCNA_00230 0.55 +0.3
246,448 + CCNA_00230 0.55 -0.7
246,495 + CCNA_00230 0.59 +1.2
246,495 + CCNA_00230 0.59 +1.7
246,500 + CCNA_00230 0.59 +1.3
246,503 - CCNA_00230 0.60 +1.4
246,503 - CCNA_00230 0.60 +1.3
246,508 - CCNA_00230 0.60 +1.6
246,508 - CCNA_00230 0.60 +1.6
246,508 - CCNA_00230 0.60 +2.0
246,551 - CCNA_00230 0.63 -1.7
246,562 + CCNA_00230 0.64 -0.9
246,562 + CCNA_00230 0.64 +1.8
246,570 - CCNA_00230 0.65 +2.0
246,570 - CCNA_00230 0.65 +1.4
246,601 + CCNA_00230 0.67 +1.2
246,609 + CCNA_00230 0.68 -0.4
246,609 + CCNA_00230 0.68 -0.6
246,617 + CCNA_00230 0.69 +1.3
246,625 - CCNA_00230 0.69 -1.0
246,657 + CCNA_00230 0.72 -0.6
246,665 - CCNA_00230 0.73 +1.2
246,665 - CCNA_00230 0.73 -0.7
246,665 - CCNA_00230 0.73 +1.1
246,665 - CCNA_00230 0.73 +1.1
246,665 - CCNA_00230 0.73 +1.4
246,665 - CCNA_00230 0.73 +1.7
246,727 + CCNA_00230 0.78 +1.0
246,735 - CCNA_00230 0.78 -0.0
246,765 + CCNA_00230 0.81 +2.0
246,786 - CCNA_00230 0.82 +0.5
246,824 + CCNA_00230 0.85 -0.9
246,832 - CCNA_00230 0.86 +1.8
246,858 + CCNA_00230 0.88 +0.7
246,866 - CCNA_00230 0.89 +1.7
246,866 - CCNA_00230 0.89 +1.1
246,884 - +2.0
246,905 + +0.8
246,913 - +1.9
246,936 - +1.1
246,960 + +0.5
246,977 + -0.4
246,980 - +0.1
247,018 + -0.3
247,021 - -0.7
247,021 - +0.2
247,021 - -0.6
247,040 + -0.0
247,072 - -0.5
247,076 + -1.1
247,084 - -0.8
247,084 - -1.6
247,522 + +2.4
247,522 + +2.5
247,530 - -0.4
247,558 + +0.9
247,582 + CCNA_00232 0.11 +0.2
247,587 + CCNA_00232 0.12 +1.6
247,587 + CCNA_00232 0.12 -1.1
247,595 - CCNA_00232 0.14 +2.0
247,609 - CCNA_00232 0.17 +1.7
247,633 + CCNA_00232 0.23 -0.1
247,654 - CCNA_00232 0.28 +1.3
247,656 + CCNA_00232 0.29 -0.7
247,659 - CCNA_00232 0.29 +0.1
247,664 - CCNA_00232 0.30 +0.1
247,664 - CCNA_00232 0.30 +0.8
247,664 - CCNA_00232 0.30 +2.2
247,672 - CCNA_00232 0.32 -0.1
247,673 + CCNA_00232 0.33 +1.3
247,686 - CCNA_00232 0.36 +0.5
247,692 - CCNA_00232 0.37 -0.6
247,709 + CCNA_00232 0.41 -1.0
247,709 + CCNA_00232 0.41 +3.3
247,715 + CCNA_00232 0.43 -0.8
247,717 - CCNA_00232 0.43 -1.7
247,722 - CCNA_00232 0.44 +0.3
247,732 - CCNA_00232 0.47 +0.3
247,750 + CCNA_00232 0.51 +0.0
247,750 + CCNA_00232 0.51 -0.3
247,758 - CCNA_00232 0.53 -2.0
247,758 - CCNA_00232 0.53 -0.9
247,759 + CCNA_00232 0.53 -0.9
247,808 + CCNA_00232 0.65 -0.5
247,816 - CCNA_00232 0.67 -0.6
247,816 - CCNA_00232 0.67 +0.2
247,824 + CCNA_00232 0.69 -1.9
247,850 - CCNA_00232 0.75 -0.9
247,864 - CCNA_00232 0.78 +0.2
247,864 - CCNA_00232 0.78 -1.7
247,864 - CCNA_00232 0.78 -0.2
247,889 - CCNA_00232 0.84 +0.6
247,975 + -0.1
247,994 - +1.6
247,994 - -0.6
248,037 + -1.2
248,072 - -0.3
248,074 + +0.4
248,109 + +0.9
248,122 + -0.9
248,122 + -0.6
248,135 - +1.6
248,147 + +1.2
248,162 + -0.7
248,213 - CCNA_00233 0.13 -1.1
248,227 + CCNA_00233 0.14 -0.9
248,227 + CCNA_00233 0.14 +1.2
248,235 - CCNA_00233 0.15 -1.1
248,256 - CCNA_00233 0.17 +0.7
248,256 - CCNA_00233 0.17 -1.9
248,267 + CCNA_00233 0.18 -0.7
248,275 + CCNA_00233 0.19 -1.1
248,335 + CCNA_00233 0.24 -0.8
248,335 + CCNA_00233 0.24 -0.9
248,336 - CCNA_00233 0.24 -1.9
248,397 + CCNA_00233 0.30 -0.6
248,402 + CCNA_00233 0.31 -0.8
248,405 - CCNA_00233 0.31 +0.1
248,407 + CCNA_00233 0.31 +0.8
248,410 - +1.4
248,417 - CCNA_00233 0.32 -2.3
248,417 - CCNA_00233 0.32 +1.9
248,429 - CCNA_00233 0.33 -1.1
248,436 - CCNA_00233 0.34 -0.5
248,454 + CCNA_00233 0.36 -3.6
248,454 + CCNA_00233 0.36 +0.2
248,458 + CCNA_00233 0.36 +0.3
248,461 - CCNA_00233 0.37 +0.2
248,462 - CCNA_00233 0.37 -0.3
248,462 - CCNA_00233 0.37 +2.0
248,463 + CCNA_00233 0.37 -0.4
248,476 - CCNA_00233 0.38 -0.5
248,493 + CCNA_00233 0.40 -0.1
248,493 + CCNA_00233 0.40 +0.3
248,505 + CCNA_00233 0.41 +0.1
248,506 - CCNA_00233 0.41 -0.4
248,518 - CCNA_00233 0.42 -0.3
248,526 + CCNA_00233 0.43 -0.4
248,528 + CCNA_00233 0.43 -1.5
248,528 + CCNA_00233 0.43 -0.2
248,528 + CCNA_00233 0.43 +0.6
248,536 - CCNA_00233 0.44 -0.5

Or see this region's nucleotide sequence