Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00052

Experiment: PYE with Cobalt chloride 0.08 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00050 and CCNA_00051 overlap by 4 nucleotidesCCNA_00051 and CCNA_00052 are separated by 8 nucleotidesCCNA_00052 and CCNA_00053 are separated by 37 nucleotidesCCNA_00053 and CCNA_00054 overlap by 4 nucleotides CCNA_00050: CCNA_00050 - apolipoprotein N-acyltransferase, at 52,707 to 54,299 _00050 CCNA_00051: CCNA_00051 - magnesium and cobalt efflux protein CorC, at 54,296 to 55,222 _00051 CCNA_00052: CCNA_00052 - metal-dependent hydrolase/metalloproteinase, at 55,231 to 55,686 _00052 CCNA_00053: CCNA_00053 - phosphate starvation-inducible protein PhoH, at 55,724 to 56,668 _00053 CCNA_00054: CCNA_00054 - tRNA 2-methylthioadenosine synthase, at 56,665 to 58,011 _00054 Position (kb) 55 56Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 54.251 kb on + strandat 54.251 kb on + strandat 54.262 kb on + strandat 54.262 kb on + strandat 54.262 kb on + strandat 54.270 kb on - strandat 54.270 kb on - strandat 54.270 kb on - strandat 54.270 kb on - strandat 54.270 kb on - strandat 54.270 kb on - strandat 54.381 kb on + strandat 54.459 kb on + strand, within CCNA_00051at 54.459 kb on + strand, within CCNA_00051at 54.470 kb on + strand, within CCNA_00051at 54.494 kb on + strand, within CCNA_00051at 54.494 kb on + strand, within CCNA_00051at 54.500 kb on - strand, within CCNA_00051at 54.502 kb on - strand, within CCNA_00051at 54.502 kb on - strand, within CCNA_00051at 54.506 kb on - strand, within CCNA_00051at 54.520 kb on + strand, within CCNA_00051at 54.520 kb on + strand, within CCNA_00051at 54.526 kb on + strand, within CCNA_00051at 54.526 kb on + strand, within CCNA_00051at 54.528 kb on - strand, within CCNA_00051at 54.533 kb on + strand, within CCNA_00051at 54.538 kb on + strand, within CCNA_00051at 54.551 kb on - strand, within CCNA_00051at 54.551 kb on - strand, within CCNA_00051at 54.560 kb on - strand, within CCNA_00051at 54.561 kb on - strand, within CCNA_00051at 54.599 kb on + strand, within CCNA_00051at 54.636 kb on + strand, within CCNA_00051at 54.647 kb on + strand, within CCNA_00051at 54.687 kb on - strand, within CCNA_00051at 54.713 kb on + strand, within CCNA_00051at 54.721 kb on - strand, within CCNA_00051at 54.751 kb on + strand, within CCNA_00051at 54.770 kb on + strand, within CCNA_00051at 54.778 kb on - strand, within CCNA_00051at 54.792 kb on - strand, within CCNA_00051at 54.793 kb on - strand, within CCNA_00051at 54.804 kb on + strand, within CCNA_00051at 54.822 kb on - strand, within CCNA_00051at 54.829 kb on + strand, within CCNA_00051at 54.829 kb on + strand, within CCNA_00051at 54.870 kb on + strand, within CCNA_00051at 54.878 kb on - strand, within CCNA_00051at 55.015 kb on - strand, within CCNA_00051at 55.035 kb on - strand, within CCNA_00051at 55.044 kb on + strand, within CCNA_00051at 55.044 kb on + strand, within CCNA_00051at 55.045 kb on - strand, within CCNA_00051at 55.133 kb on + strandat 55.152 kb on + strandat 55.152 kb on + strandat 55.204 kb on - strandat 55.206 kb on - strandat 55.220 kb on - strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.227 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.234 kb on + strandat 55.253 kb on + strandat 55.260 kb on - strandat 55.270 kb on + strandat 55.669 kb on - strandat 55.679 kb on + strandat 55.696 kb on + strandat 55.720 kb on + strandat 55.736 kb on + strandat 55.744 kb on - strandat 55.768 kb on - strandat 55.824 kb on + strand, within CCNA_00053at 55.830 kb on + strand, within CCNA_00053at 55.838 kb on - strand, within CCNA_00053at 55.838 kb on - strand, within CCNA_00053at 55.838 kb on - strand, within CCNA_00053at 55.855 kb on - strand, within CCNA_00053at 55.862 kb on + strand, within CCNA_00053at 55.874 kb on - strand, within CCNA_00053at 55.882 kb on + strand, within CCNA_00053at 55.899 kb on - strand, within CCNA_00053at 55.946 kb on + strand, within CCNA_00053at 55.959 kb on - strand, within CCNA_00053at 55.964 kb on - strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 56.007 kb on - strand, within CCNA_00053at 56.025 kb on - strand, within CCNA_00053at 56.025 kb on - strand, within CCNA_00053at 56.049 kb on + strand, within CCNA_00053at 56.049 kb on + strand, within CCNA_00053at 56.050 kb on + strand, within CCNA_00053at 56.089 kb on - strand, within CCNA_00053at 56.089 kb on - strand, within CCNA_00053at 56.186 kb on + strand, within CCNA_00053at 56.209 kb on + strand, within CCNA_00053at 56.250 kb on - strand, within CCNA_00053at 56.270 kb on + strand, within CCNA_00053at 56.288 kb on - strand, within CCNA_00053at 56.299 kb on - strand, within CCNA_00053at 56.319 kb on - strand, within CCNA_00053at 56.327 kb on + strand, within CCNA_00053at 56.334 kb on - strand, within CCNA_00053at 56.357 kb on + strand, within CCNA_00053at 56.364 kb on + strand, within CCNA_00053at 56.372 kb on - strand, within CCNA_00053at 56.390 kb on - strand, within CCNA_00053at 56.405 kb on + strand, within CCNA_00053at 56.418 kb on - strand, within CCNA_00053at 56.432 kb on + strand, within CCNA_00053at 56.450 kb on - strand, within CCNA_00053at 56.474 kb on + strand, within CCNA_00053at 56.484 kb on - strand, within CCNA_00053at 56.491 kb on - strand, within CCNA_00053at 56.502 kb on + strand, within CCNA_00053at 56.533 kb on + strand, within CCNA_00053at 56.566 kb on + strand, within CCNA_00053at 56.566 kb on + strand, within CCNA_00053at 56.574 kb on - strandat 56.574 kb on - strandat 56.577 kb on + strandat 56.577 kb on + strandat 56.582 kb on + strandat 56.618 kb on + strandat 56.618 kb on + strandat 56.639 kb on - strandat 56.648 kb on + strandat 56.651 kb on - strandat 56.656 kb on - strandat 56.656 kb on - strandat 56.658 kb on - strandat 56.674 kb on + strandat 56.682 kb on - strandat 56.684 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Cobalt chloride 0.08 mM
remove
54,251 + +2.4
54,251 + +1.6
54,262 + +0.3
54,262 + +1.0
54,262 + +2.2
54,270 - +0.4
54,270 - +0.8
54,270 - +0.0
54,270 - -0.3
54,270 - -0.1
54,270 - +0.4
54,381 + +0.9
54,459 + CCNA_00051 0.18 +3.8
54,459 + CCNA_00051 0.18 -1.0
54,470 + CCNA_00051 0.19 +3.8
54,494 + CCNA_00051 0.21 +2.8
54,494 + CCNA_00051 0.21 +1.8
54,500 - CCNA_00051 0.22 +3.9
54,502 - CCNA_00051 0.22 +3.2
54,502 - CCNA_00051 0.22 +3.9
54,506 - CCNA_00051 0.23 +3.8
54,520 + CCNA_00051 0.24 +2.0
54,520 + CCNA_00051 0.24 +2.1
54,526 + CCNA_00051 0.25 +3.6
54,526 + CCNA_00051 0.25 +2.2
54,528 - CCNA_00051 0.25 +5.7
54,533 + CCNA_00051 0.26 +2.6
54,538 + CCNA_00051 0.26 +2.9
54,551 - CCNA_00051 0.28 +4.5
54,551 - CCNA_00051 0.28 +4.3
54,560 - CCNA_00051 0.28 +3.5
54,561 - CCNA_00051 0.29 +4.0
54,599 + CCNA_00051 0.33 +4.3
54,636 + CCNA_00051 0.37 +1.6
54,647 + CCNA_00051 0.38 +4.4
54,687 - CCNA_00051 0.42 +3.7
54,713 + CCNA_00051 0.45 +1.7
54,721 - CCNA_00051 0.46 +2.7
54,751 + CCNA_00051 0.49 +4.6
54,770 + CCNA_00051 0.51 +3.8
54,778 - CCNA_00051 0.52 +2.6
54,792 - CCNA_00051 0.54 +3.3
54,793 - CCNA_00051 0.54 +3.8
54,804 + CCNA_00051 0.55 +2.5
54,822 - CCNA_00051 0.57 +4.7
54,829 + CCNA_00051 0.57 +2.9
54,829 + CCNA_00051 0.57 +3.5
54,870 + CCNA_00051 0.62 +2.3
54,878 - CCNA_00051 0.63 +3.2
55,015 - CCNA_00051 0.78 +2.9
55,035 - CCNA_00051 0.80 +3.2
55,044 + CCNA_00051 0.81 -0.9
55,044 + CCNA_00051 0.81 +2.6
55,045 - CCNA_00051 0.81 +2.7
55,133 + +1.3
55,152 + +2.0
55,152 + +0.6
55,204 - +3.5
55,206 - +5.1
55,220 - +3.0
55,224 + +0.6
55,224 + +0.3
55,224 + +3.2
55,224 + -0.3
55,227 - +1.5
55,232 - +1.8
55,232 - -0.2
55,232 - +1.5
55,232 - +0.0
55,232 - -0.5
55,232 - +1.4
55,232 - -1.1
55,232 - +0.5
55,232 - -1.5
55,232 - +0.7
55,232 - +2.1
55,234 + +2.5
55,253 + +2.4
55,260 - +4.1
55,270 + +2.0
55,669 - -0.2
55,679 + -1.2
55,696 + -0.1
55,720 + +2.4
55,736 + -0.7
55,744 - +0.2
55,768 - -0.2
55,824 + CCNA_00053 0.11 +0.8
55,830 + CCNA_00053 0.11 +2.3
55,838 - CCNA_00053 0.12 +0.1
55,838 - CCNA_00053 0.12 -0.3
55,838 - CCNA_00053 0.12 -2.0
55,855 - CCNA_00053 0.14 +0.6
55,862 + CCNA_00053 0.15 -1.5
55,874 - CCNA_00053 0.16 -0.7
55,882 + CCNA_00053 0.17 -0.4
55,899 - CCNA_00053 0.19 -0.2
55,946 + CCNA_00053 0.23 -1.0
55,959 - CCNA_00053 0.25 +1.8
55,964 - CCNA_00053 0.25 -0.6
55,979 + CCNA_00053 0.27 -0.4
55,979 + CCNA_00053 0.27 -0.0
55,979 + CCNA_00053 0.27 +0.3
55,987 - CCNA_00053 0.28 -0.1
55,987 - CCNA_00053 0.28 -0.8
55,987 - CCNA_00053 0.28 -0.5
55,987 - CCNA_00053 0.28 +0.1
55,987 - CCNA_00053 0.28 +0.1
55,987 - CCNA_00053 0.28 +0.4
55,987 - CCNA_00053 0.28 +0.6
56,007 - CCNA_00053 0.30 -1.0
56,025 - CCNA_00053 0.32 -0.3
56,025 - CCNA_00053 0.32 -0.4
56,049 + CCNA_00053 0.34 +0.3
56,049 + CCNA_00053 0.34 -0.2
56,050 + CCNA_00053 0.34 +0.1
56,089 - CCNA_00053 0.39 -0.0
56,089 - CCNA_00053 0.39 -0.3
56,186 + CCNA_00053 0.49 -0.4
56,209 + CCNA_00053 0.51 +0.5
56,250 - CCNA_00053 0.56 -0.3
56,270 + CCNA_00053 0.58 +0.2
56,288 - CCNA_00053 0.60 -0.6
56,299 - CCNA_00053 0.61 -0.1
56,319 - CCNA_00053 0.63 +0.1
56,327 + CCNA_00053 0.64 -2.5
56,334 - CCNA_00053 0.65 -0.5
56,357 + CCNA_00053 0.67 +1.0
56,364 + CCNA_00053 0.68 +0.3
56,372 - CCNA_00053 0.69 -0.2
56,390 - CCNA_00053 0.70 -0.2
56,405 + CCNA_00053 0.72 -1.7
56,418 - CCNA_00053 0.73 +0.1
56,432 + CCNA_00053 0.75 +1.5
56,450 - CCNA_00053 0.77 +0.2
56,474 + CCNA_00053 0.79 +0.9
56,484 - CCNA_00053 0.80 -0.5
56,491 - CCNA_00053 0.81 +0.6
56,502 + CCNA_00053 0.82 -0.4
56,533 + CCNA_00053 0.86 -0.1
56,566 + CCNA_00053 0.89 -1.4
56,566 + CCNA_00053 0.89 -0.9
56,574 - +1.9
56,574 - +0.6
56,577 + -0.9
56,577 + -0.3
56,582 + +0.4
56,618 + +1.2
56,618 + -0.9
56,639 - -0.5
56,648 + +0.5
56,651 - -1.7
56,656 - +0.6
56,656 - -0.1
56,658 - +0.2
56,674 + -1.2
56,682 - -1.1
56,684 + -2.4

Or see this region's nucleotide sequence