Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03150

Experiment: nitrate (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS03145 and AZOBR_RS03150 are separated by 147 nucleotidesAZOBR_RS03150 and AZOBR_RS03155 are separated by 131 nucleotides AZOBR_RS03145: AZOBR_RS03145 - diguanylate cyclase, at 670,143 to 671,018 _RS03145 AZOBR_RS03150: AZOBR_RS03150 - uracil phosphoribosyltransferase, at 671,166 to 671,816 _RS03150 AZOBR_RS03155: AZOBR_RS03155 - iron ABC transporter permease, at 671,948 to 673,672 _RS03155 Position (kb) 671 672Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 670.437 kb on + strand, within AZOBR_RS03145at 670.437 kb on + strand, within AZOBR_RS03145at 670.662 kb on + strand, within AZOBR_RS03145at 670.662 kb on + strand, within AZOBR_RS03145at 670.959 kb on + strandat 671.308 kb on - strand, within AZOBR_RS03150at 671.308 kb on - strand, within AZOBR_RS03150at 671.887 kb on - strandat 671.940 kb on - strandat 672.336 kb on - strand, within AZOBR_RS03155at 672.482 kb on + strand, within AZOBR_RS03155at 672.488 kb on + strand, within AZOBR_RS03155at 672.489 kb on - strand, within AZOBR_RS03155at 672.547 kb on + strand, within AZOBR_RS03155at 672.704 kb on + strand, within AZOBR_RS03155at 672.704 kb on + strand, within AZOBR_RS03155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
remove
670,437 + AZOBR_RS03145 0.34 -0.0
670,437 + AZOBR_RS03145 0.34 -1.0
670,662 + AZOBR_RS03145 0.59 -1.0
670,662 + AZOBR_RS03145 0.59 -1.5
670,959 + -0.0
671,308 - AZOBR_RS03150 0.22 -0.3
671,308 - AZOBR_RS03150 0.22 -1.7
671,887 - -3.2
671,940 - -3.5
672,336 - AZOBR_RS03155 0.22 -1.0
672,482 + AZOBR_RS03155 0.31 -4.2
672,488 + AZOBR_RS03155 0.31 -5.1
672,489 - AZOBR_RS03155 0.31 -2.3
672,547 + AZOBR_RS03155 0.35 -2.4
672,704 + AZOBR_RS03155 0.44 -2.6
672,704 + AZOBR_RS03155 0.44 -3.4

Or see this region's nucleotide sequence