Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03135 and AZOBR_RS03140 are separated by 12 nucleotides AZOBR_RS03140 and AZOBR_RS03145 are separated by 184 nucleotides AZOBR_RS03145 and AZOBR_RS03150 are separated by 147 nucleotides AZOBR_RS03150 and AZOBR_RS03155 are separated by 131 nucleotides
AZOBR_RS03135: AZOBR_RS03135 - orotidine 5'-phosphate decarboxylase, at 668,588 to 669,301
_RS03135
AZOBR_RS03140: AZOBR_RS03140 - N-(5'-phosphoribosyl)anthranilate isomerase, at 669,314 to 669,958
_RS03140
AZOBR_RS03145: AZOBR_RS03145 - diguanylate cyclase, at 670,143 to 671,018
_RS03145
AZOBR_RS03150: AZOBR_RS03150 - uracil phosphoribosyltransferase, at 671,166 to 671,816
_RS03150
AZOBR_RS03155: AZOBR_RS03155 - iron ABC transporter permease, at 671,948 to 673,672
_RS03155
Position (kb) 670
671
672 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 669.299 kb on + strand at 669.299 kb on + strand at 669.299 kb on + strand at 669.299 kb on + strand at 669.300 kb on - strand at 669.313 kb on + strand at 669.390 kb on - strand at 670.036 kb on + strand at 670.037 kb on - strand at 670.437 kb on + strand, within AZOBR_RS03145 at 670.437 kb on + strand, within AZOBR_RS03145 at 670.662 kb on + strand, within AZOBR_RS03145 at 670.662 kb on + strand, within AZOBR_RS03145 at 670.959 kb on + strand at 671.308 kb on - strand, within AZOBR_RS03150 at 671.308 kb on - strand, within AZOBR_RS03150 at 671.887 kb on - strand at 671.940 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 669,299 + +0.4 669,299 + +0.3 669,299 + -0.7 669,299 + -0.3 669,300 - -1.0 669,313 + -3.4 669,390 - +1.0 670,036 + -0.1 670,037 - -0.3 670,437 + AZOBR_RS03145 0.34 -0.0 670,437 + AZOBR_RS03145 0.34 -1.0 670,662 + AZOBR_RS03145 0.59 -1.0 670,662 + AZOBR_RS03145 0.59 -1.5 670,959 + -0.0 671,308 - AZOBR_RS03150 0.22 -0.3 671,308 - AZOBR_RS03150 0.22 -1.7 671,887 - -3.2 671,940 - -3.5
Or see this region's nucleotide sequence