Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01080 and AZOBR_RS01085 are separated by 309 nucleotides AZOBR_RS01085 and AZOBR_RS01090 are separated by 106 nucleotides AZOBR_RS01090 and AZOBR_RS01095 are separated by 23 nucleotides
AZOBR_RS01080: AZOBR_RS01080 - cysteine synthase, at 219,778 to 220,737
_RS01080
AZOBR_RS01085: AZOBR_RS01085 - hypothetical protein, at 221,047 to 221,820
_RS01085
AZOBR_RS01090: AZOBR_RS01090 - thiamine biosynthesis protein ThiF, at 221,927 to 222,715
_RS01090
AZOBR_RS01095: AZOBR_RS01095 - hypothetical protein, at 222,739 to 223,176
_RS01095
Position (kb) 221
222 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 220.702 kb on + strand at 220.702 kb on + strand at 220.702 kb on + strand at 220.703 kb on - strand at 220.736 kb on - strand at 220.790 kb on + strand at 220.791 kb on - strand at 220.819 kb on + strand at 220.844 kb on + strand at 220.844 kb on + strand at 220.845 kb on - strand at 220.924 kb on + strand at 221.141 kb on - strand, within AZOBR_RS01085 at 221.299 kb on + strand, within AZOBR_RS01085 at 221.300 kb on - strand, within AZOBR_RS01085 at 221.300 kb on - strand, within AZOBR_RS01085 at 221.300 kb on - strand, within AZOBR_RS01085 at 221.301 kb on + strand, within AZOBR_RS01085 at 221.302 kb on - strand, within AZOBR_RS01085 at 221.302 kb on - strand, within AZOBR_RS01085 at 221.348 kb on - strand, within AZOBR_RS01085 at 221.680 kb on + strand, within AZOBR_RS01085 at 221.833 kb on + strand at 221.914 kb on + strand at 222.068 kb on + strand, within AZOBR_RS01090 at 222.351 kb on - strand, within AZOBR_RS01090 at 222.351 kb on - strand, within AZOBR_RS01090
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 220,702 + -0.3 220,702 + -0.4 220,702 + +0.4 220,703 - +0.7 220,736 - +0.5 220,790 + -0.3 220,791 - +0.1 220,819 + -0.8 220,844 + +0.3 220,844 + -0.1 220,845 - -0.2 220,924 + +0.8 221,141 - AZOBR_RS01085 0.12 +0.5 221,299 + AZOBR_RS01085 0.33 +0.7 221,300 - AZOBR_RS01085 0.33 -0.1 221,300 - AZOBR_RS01085 0.33 +0.9 221,300 - AZOBR_RS01085 0.33 +1.1 221,301 + AZOBR_RS01085 0.33 +0.1 221,302 - AZOBR_RS01085 0.33 -0.1 221,302 - AZOBR_RS01085 0.33 +0.1 221,348 - AZOBR_RS01085 0.39 +0.1 221,680 + AZOBR_RS01085 0.82 -1.0 221,833 + -0.5 221,914 + -0.0 222,068 + AZOBR_RS01090 0.18 -2.9 222,351 - AZOBR_RS01090 0.54 -2.9 222,351 - AZOBR_RS01090 0.54 -1.2
Or see this region's nucleotide sequence