Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19310

Experiment: Spectinomycin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19305 and AO353_19310 are separated by 59 nucleotidesAO353_19310 and AO353_19315 overlap by 4 nucleotides AO353_19305: AO353_19305 - 3-methylcrotonyl-CoA carboxylase, at 4,230,081 to 4,232,042 _19305 AO353_19310: AO353_19310 - enoyl-CoA hydratase, at 4,232,102 to 4,232,899 _19310 AO353_19315: AO353_19315 - acyl-CoA dehydrogenase, at 4,232,896 to 4,234,053 _19315 Position (kb) 4232 4233Strain fitness (log2 ratio) -2 -1 0 1 2at 4231.183 kb on + strand, within AO353_19305at 4231.184 kb on - strand, within AO353_19305at 4231.184 kb on - strand, within AO353_19305at 4231.235 kb on - strand, within AO353_19305at 4231.235 kb on - strand, within AO353_19305at 4231.235 kb on - strand, within AO353_19305at 4231.369 kb on + strand, within AO353_19305at 4231.369 kb on + strand, within AO353_19305at 4231.369 kb on + strand, within AO353_19305at 4231.369 kb on + strand, within AO353_19305at 4231.369 kb on + strandat 4231.370 kb on - strand, within AO353_19305at 4231.370 kb on - strand, within AO353_19305at 4231.610 kb on + strand, within AO353_19305at 4231.730 kb on + strand, within AO353_19305at 4231.858 kb on + strandat 4231.858 kb on + strandat 4231.859 kb on - strandat 4231.998 kb on + strandat 4231.998 kb on + strandat 4231.998 kb on + strandat 4231.999 kb on - strandat 4231.999 kb on - strandat 4232.068 kb on + strandat 4232.069 kb on - strandat 4232.069 kb on - strandat 4232.069 kb on - strandat 4232.103 kb on + strandat 4232.132 kb on + strandat 4232.132 kb on + strandat 4232.133 kb on - strandat 4232.133 kb on - strandat 4232.420 kb on + strand, within AO353_19310at 4232.420 kb on + strand, within AO353_19310at 4232.421 kb on - strand, within AO353_19310at 4232.771 kb on + strand, within AO353_19310at 4232.986 kb on + strandat 4232.986 kb on + strandat 4232.986 kb on + strandat 4232.986 kb on + strandat 4232.986 kb on + strandat 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.026 kb on + strand, within AO353_19315at 4233.026 kb on + strand, within AO353_19315at 4233.026 kb on + strand, within AO353_19315at 4233.026 kb on + strand, within AO353_19315at 4233.026 kb on + strand, within AO353_19315at 4233.027 kb on - strand, within AO353_19315at 4233.027 kb on - strand, within AO353_19315at 4233.027 kb on - strand, within AO353_19315at 4233.045 kb on - strand, within AO353_19315at 4233.137 kb on + strand, within AO353_19315at 4233.137 kb on + strand, within AO353_19315at 4233.138 kb on - strand, within AO353_19315at 4233.138 kb on - strand, within AO353_19315at 4233.138 kb on - strand, within AO353_19315at 4233.138 kb on - strand, within AO353_19315at 4233.138 kb on - strand, within AO353_19315at 4233.155 kb on + strand, within AO353_19315at 4233.156 kb on - strand, within AO353_19315at 4233.263 kb on + strand, within AO353_19315at 4233.263 kb on + strand, within AO353_19315at 4233.263 kb on + strand, within AO353_19315at 4233.287 kb on + strand, within AO353_19315at 4233.287 kb on + strand, within AO353_19315at 4233.288 kb on - strand, within AO353_19315at 4233.419 kb on - strand, within AO353_19315at 4233.611 kb on + strand, within AO353_19315at 4233.612 kb on - strand, within AO353_19315at 4233.612 kb on - strand, within AO353_19315at 4233.612 kb on - strand, within AO353_19315at 4233.612 kb on - strand, within AO353_19315at 4233.708 kb on + strand, within AO353_19315at 4233.709 kb on - strand, within AO353_19315at 4233.777 kb on + strand, within AO353_19315at 4233.777 kb on + strand, within AO353_19315at 4233.778 kb on - strand, within AO353_19315at 4233.778 kb on - strand, within AO353_19315at 4233.854 kb on + strand, within AO353_19315at 4233.854 kb on + strand, within AO353_19315at 4233.854 kb on + strand, within AO353_19315at 4233.855 kb on - strand, within AO353_19315at 4233.855 kb on - strand, within AO353_19315at 4233.855 kb on - strand, within AO353_19315at 4233.855 kb on - strand, within AO353_19315at 4233.860 kb on + strand, within AO353_19315at 4233.860 kb on + strand, within AO353_19315at 4233.860 kb on + strand, within AO353_19315at 4233.861 kb on - strand, within AO353_19315at 4233.861 kb on - strand, within AO353_19315at 4233.861 kb on - strand, within AO353_19315

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.1 mg/ml
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4,231,183 + AO353_19305 0.56 -0.1
4,231,184 - AO353_19305 0.56 +1.1
4,231,184 - AO353_19305 0.56 +0.8
4,231,235 - AO353_19305 0.59 +0.6
4,231,235 - AO353_19305 0.59 +0.5
4,231,235 - AO353_19305 0.59 -0.5
4,231,369 + AO353_19305 0.66 -0.1
4,231,369 + AO353_19305 0.66 -1.1
4,231,369 + AO353_19305 0.66 +1.0
4,231,369 + AO353_19305 0.66 -0.1
4,231,369 + +1.3
4,231,370 - AO353_19305 0.66 +0.4
4,231,370 - AO353_19305 0.66 +0.5
4,231,610 + AO353_19305 0.78 -0.1
4,231,730 + AO353_19305 0.84 -0.5
4,231,858 + -0.8
4,231,858 + -0.6
4,231,859 - -0.2
4,231,998 + +0.5
4,231,998 + +0.5
4,231,998 + -0.1
4,231,999 - -0.2
4,231,999 - -1.0
4,232,068 + -0.6
4,232,069 - +0.2
4,232,069 - +0.2
4,232,069 - -1.5
4,232,103 + +0.2
4,232,132 + +0.1
4,232,132 + +0.1
4,232,133 - -0.6
4,232,133 - +0.2
4,232,420 + AO353_19310 0.40 -1.4
4,232,420 + AO353_19310 0.40 +0.0
4,232,421 - AO353_19310 0.40 +1.5
4,232,771 + AO353_19310 0.84 -2.2
4,232,986 + +0.3
4,232,986 + +0.1
4,232,986 + -0.7
4,232,986 + -0.3
4,232,986 + -0.9
4,233,024 + AO353_19315 0.11 -0.1
4,233,024 + AO353_19315 0.11 -1.3
4,233,024 + AO353_19315 0.11 -0.0
4,233,024 + AO353_19315 0.11 +0.0
4,233,024 + AO353_19315 0.11 +1.5
4,233,024 + AO353_19315 0.11 +0.7
4,233,024 + AO353_19315 0.11 -0.0
4,233,024 + AO353_19315 0.11 +0.7
4,233,024 + AO353_19315 0.11 +0.5
4,233,024 + AO353_19315 0.11 -0.2
4,233,024 + AO353_19315 0.11 +0.5
4,233,024 + AO353_19315 0.11 -0.5
4,233,024 + AO353_19315 0.11 +1.8
4,233,024 + AO353_19315 0.11 +0.3
4,233,024 + AO353_19315 0.11 -0.8
4,233,024 + AO353_19315 0.11 -0.1
4,233,024 + AO353_19315 0.11 +0.4
4,233,024 + AO353_19315 0.11 -1.5
4,233,024 + AO353_19315 0.11 -0.1
4,233,024 + AO353_19315 0.11 +0.8
4,233,024 + AO353_19315 0.11 +0.7
4,233,024 + AO353_19315 0.11 +0.4
4,233,024 + AO353_19315 0.11 +1.0
4,233,025 - AO353_19315 0.11 +0.4
4,233,025 - AO353_19315 0.11 -1.7
4,233,025 - AO353_19315 0.11 +0.0
4,233,025 - AO353_19315 0.11 -2.1
4,233,025 - AO353_19315 0.11 +0.2
4,233,025 - AO353_19315 0.11 -1.0
4,233,025 - AO353_19315 0.11 -0.9
4,233,025 - AO353_19315 0.11 +0.5
4,233,025 - AO353_19315 0.11 +0.9
4,233,025 - AO353_19315 0.11 +0.6
4,233,025 - AO353_19315 0.11 +0.9
4,233,025 - AO353_19315 0.11 -0.8
4,233,025 - AO353_19315 0.11 -2.0
4,233,025 - AO353_19315 0.11 +0.8
4,233,026 + AO353_19315 0.11 -0.8
4,233,026 + AO353_19315 0.11 +1.3
4,233,026 + AO353_19315 0.11 -0.0
4,233,026 + AO353_19315 0.11 +0.4
4,233,026 + AO353_19315 0.11 +0.5
4,233,027 - AO353_19315 0.11 -1.5
4,233,027 - AO353_19315 0.11 +1.5
4,233,027 - AO353_19315 0.11 -0.2
4,233,045 - AO353_19315 0.13 +0.0
4,233,137 + AO353_19315 0.21 -0.5
4,233,137 + AO353_19315 0.21 +0.2
4,233,138 - AO353_19315 0.21 -0.1
4,233,138 - AO353_19315 0.21 +1.5
4,233,138 - AO353_19315 0.21 -0.8
4,233,138 - AO353_19315 0.21 -0.4
4,233,138 - AO353_19315 0.21 -0.8
4,233,155 + AO353_19315 0.22 +0.0
4,233,156 - AO353_19315 0.22 -1.1
4,233,263 + AO353_19315 0.32 +1.2
4,233,263 + AO353_19315 0.32 -0.1
4,233,263 + AO353_19315 0.32 +0.7
4,233,287 + AO353_19315 0.34 -0.2
4,233,287 + AO353_19315 0.34 -0.5
4,233,288 - AO353_19315 0.34 -0.7
4,233,419 - AO353_19315 0.45 +0.3
4,233,611 + AO353_19315 0.62 -0.4
4,233,612 - AO353_19315 0.62 -0.6
4,233,612 - AO353_19315 0.62 -0.3
4,233,612 - AO353_19315 0.62 -0.5
4,233,612 - AO353_19315 0.62 -0.9
4,233,708 + AO353_19315 0.70 -0.5
4,233,709 - AO353_19315 0.70 -0.6
4,233,777 + AO353_19315 0.76 -1.9
4,233,777 + AO353_19315 0.76 -0.2
4,233,778 - AO353_19315 0.76 -0.2
4,233,778 - AO353_19315 0.76 -0.4
4,233,854 + AO353_19315 0.83 -1.7
4,233,854 + AO353_19315 0.83 -0.4
4,233,854 + AO353_19315 0.83 +0.7
4,233,855 - AO353_19315 0.83 -1.2
4,233,855 - AO353_19315 0.83 +0.2
4,233,855 - AO353_19315 0.83 -1.5
4,233,855 - AO353_19315 0.83 -0.8
4,233,860 + AO353_19315 0.83 +0.5
4,233,860 + AO353_19315 0.83 -0.1
4,233,860 + AO353_19315 0.83 -0.1
4,233,861 - AO353_19315 0.83 +1.5
4,233,861 - AO353_19315 0.83 +0.2
4,233,861 - AO353_19315 0.83 -0.3

Or see this region's nucleotide sequence