Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13505

Experiment: Spectinomycin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.1 mg/ml
2,999,387	+		AO353_13495	0.90	+0.5
2,999,387	+		AO353_13495	0.90	-0.5
2,999,388	-		AO353_13495	0.90	+1.6
2,999,388	-		AO353_13495	0.90	-0.1
2,999,451	+				-0.3
2,999,451	+				+0.3
2,999,451	+				-1.4
2,999,452	-				+0.9
2,999,452	-				-1.1
2,999,541	+				-0.8
2,999,585	-				-0.3
2,999,936	-		AO353_13500	0.62	+2.0
3,000,038	-				+0.4
3,000,075	+				-1.5
3,000,075	+				+1.0
3,000,075	+				-1.2
3,000,075	+				+0.4
3,000,075	+				+0.0
3,000,075	+				+0.7
3,000,075	+				-0.3
3,000,076	-				+0.7
3,000,076	-				-0.3
3,000,078	+				+0.3
3,000,078	+				-0.6
3,000,078	+				-0.3
3,000,078	+				+1.5
3,000,079	-				-0.2
3,000,079	-				-1.1
3,000,079	-				+0.4
3,000,096	+				+1.0
3,000,097	-				+0.8
3,000,097	-				-0.6
3,000,121	-		AO353_13505	0.13	+0.8
3,000,121	-		AO353_13505	0.13	-2.7
3,000,121	-		AO353_13505	0.13	-0.1
3,000,121	-		AO353_13505	0.13	-0.4
3,000,121	-		AO353_13505	0.13	-1.3
3,000,121	-		AO353_13505	0.13	-1.2
3,000,121	-		AO353_13505	0.13	+0.2
3,000,147	+		AO353_13505	0.18	-2.3
3,000,162	+		AO353_13505	0.21	-0.1
3,000,162	+		AO353_13505	0.21	-1.2
3,000,162	+		AO353_13505	0.21	-1.9
3,000,163	-		AO353_13505	0.21	-1.0
3,000,163	-		AO353_13505	0.21	-0.7
3,000,163	-		AO353_13505	0.21	-0.2
3,000,201	+		AO353_13505	0.28	-0.5
3,000,201	+		AO353_13505	0.28	-0.6
3,000,202	-		AO353_13505	0.28	+2.0
3,000,202	-		AO353_13505	0.28	-0.8
3,000,438	+		AO353_13505	0.73	-0.7
3,000,438	+		AO353_13505	0.73	-1.5
3,000,535	-				-0.2
3,000,535	-				+0.8
3,000,588	+				-1.5
3,000,588	+				+0.4
3,000,588	+				+1.0
3,000,588	+				-3.5
3,000,588	+				+0.2
3,000,588	+				-0.3
3,000,588	+				+0.1
3,000,588	+				+2.0
3,000,588	+				-1.0
3,000,588	+				-0.5
3,000,588	+				+1.1
3,000,588	+				+0.6
3,000,588	+				-0.8
3,000,589	-				-0.3
3,000,589	-				-0.1
3,000,589	-				-0.5
3,000,589	-				-1.0
3,000,589	-				+0.9
3,000,589	-				-0.3
3,000,589	-				-1.1
3,000,589	-				+0.7
3,000,589	-				+0.7
3,000,589	-				-0.0
3,000,589	-				+0.1
3,000,589	-				+0.3
3,000,778	+		AO353_13510	0.35	+1.2
3,000,779	-		AO353_13510	0.35	+0.1
3,000,779	-		AO353_13510	0.35	+0.4
3,000,779	-		AO353_13510	0.35	-0.9
3,000,806	+		AO353_13510	0.40	+0.4
3,000,806	+		AO353_13510	0.40	-0.6
3,000,807	-		AO353_13510	0.41	-0.7
3,000,807	-		AO353_13510	0.41	+0.7
3,000,807	-		AO353_13510	0.41	+0.9
3,000,807	-		AO353_13510	0.41	+0.2
3,000,807	-		AO353_13510	0.41	+1.0
3,000,858	+		AO353_13510	0.50	-0.2
3,000,859	-		AO353_13510	0.50	-0.8
3,000,859	-		AO353_13510	0.50	-0.3
3,000,859	-		AO353_13510	0.50	+0.3
3,000,859	-		AO353_13510	0.50	-0.3
3,000,859	-		AO353_13510	0.50	+0.7
3,000,922	-		AO353_13510	0.62	+0.6
3,001,065	+		AO353_13510	0.89	+1.5
3,001,065	+		AO353_13510	0.89	-1.5
3,001,065	+		AO353_13510	0.89	+1.7
3,001,065	+		AO353_13510	0.89	+1.2
3,001,065	+		AO353_13510	0.89	+0.5
3,001,065	+		AO353_13510	0.89	-0.6
3,001,065	+		AO353_13510	0.89	-1.5
3,001,065	+		AO353_13510	0.89	-0.1
3,001,066	-		AO353_13510	0.89	-0.3
3,001,066	-		AO353_13510	0.89	+0.5
3,001,095	+				-0.5
3,001,095	+				-0.0
3,001,096	-				-1.1
3,001,097	+				-0.3
3,001,098	-				+0.1
3,001,116	+				-0.6
3,001,116	+				+0.3
3,001,116	+				-0.1
3,001,116	+				+1.0
3,001,116	+				+0.3
3,001,116	+				-0.1
3,001,116	+				-0.5
3,001,117	-				+0.6
3,001,117	-				+0.0
3,001,117	-				+0.5
3,001,117	-				+0.2
3,001,117	-				-0.7
3,001,117	-				+0.2
3,001,117	-				-0.0
3,001,117	-				-0.3
3,001,260	+		AO353_13515	0.42	+0.4
3,001,323	+		AO353_13515	0.63	+0.3
3,001,323	+		AO353_13515	0.63	+0.4
3,001,323	+		AO353_13515	0.63	+0.4
3,001,323	+		AO353_13515	0.63	+1.3
3,001,323	+		AO353_13515	0.63	-1.5
3,001,323	+		AO353_13515	0.63	+1.8
3,001,323	+		AO353_13515	0.63	+0.0
3,001,324	-		AO353_13515	0.63	-0.2
3,001,324	-		AO353_13515	0.63	+0.4
3,001,324	-		AO353_13515	0.63	+0.6
3,001,324	-		AO353_13515	0.63	-0.0
3,001,324	-		AO353_13515	0.63	+0.8
3,001,324	-		AO353_13515	0.63	-0.2
3,001,342	-		AO353_13515	0.69	-0.7
3,001,439	+				+1.4
3,001,480	-				+0.1
3,001,510	-				+0.5
3,001,563	+				-0.0
3,001,563	+				+0.3
3,001,563	+				-1.5
3,001,564	-				+0.7
3,001,564	-				+1.4
3,001,564	-				+0.4
3,001,569	+				-1.8
3,001,569	+				-0.3
3,001,569	+				-0.5
3,001,569	+				-0.5
3,001,569	+				-0.3
3,001,569	+				+0.1
3,001,569	+				-0.0
3,001,569	+				-0.0
3,001,569	+				+1.3
3,001,569	+				+0.8
3,001,569	+				-0.5
3,001,569	+				-0.3
3,001,569	+				-0.3
3,001,569	+				-1.4
3,001,569	+				+0.9
3,001,569	+				-0.7
3,001,569	+				-1.1
3,001,569	+				+0.3
3,001,569	+				-0.7
3,001,569	+				+1.7
3,001,570	-				-1.3
3,001,570	-				+0.8
3,001,570	-				+0.5
3,001,570	-				-0.3
3,001,570	-				-0.0
3,001,570	-				-1.0
3,001,570	-				-0.4
3,001,570	-				+1.0
3,001,570	-				-0.3
3,001,570	-				+0.4
3,001,570	-				-0.6
3,001,570	-				+2.0
3,001,570	-				-0.3
3,001,570	-				+0.0
3,001,570	-				+0.5
3,001,570	-				-0.7
3,001,570	-				+0.6