Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12640

Experiment: Spectinomycin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12635 and AO353_12640 overlap by 14 nucleotidesAO353_12640 and AO353_12645 overlap by 4 nucleotides AO353_12635: AO353_12635 - FAD-dependent oxidoreductase, at 2,780,907 to 2,782,154 _12635 AO353_12640: AO353_12640 - sodium:proton antiporter, at 2,782,141 to 2,783,301 _12640 AO353_12645: AO353_12645 - hypothetical protein, at 2,783,298 to 2,785,637 _12645 Position (kb) 2782 2783 2784Strain fitness (log2 ratio) -1 0 1 2at 2781.695 kb on - strand, within AO353_12635at 2781.863 kb on + strand, within AO353_12635at 2781.952 kb on - strand, within AO353_12635at 2781.952 kb on - strand, within AO353_12635at 2782.139 kb on + strandat 2782.256 kb on + strandat 2782.256 kb on + strandat 2782.401 kb on + strand, within AO353_12640at 2782.401 kb on + strand, within AO353_12640at 2782.579 kb on + strand, within AO353_12640at 2782.579 kb on + strand, within AO353_12640at 2782.579 kb on + strand, within AO353_12640at 2782.579 kb on + strand, within AO353_12640at 2782.608 kb on - strand, within AO353_12640at 2782.753 kb on + strand, within AO353_12640at 2782.753 kb on + strand, within AO353_12640at 2782.753 kb on + strand, within AO353_12640at 2782.753 kb on + strand, within AO353_12640at 2782.754 kb on - strand, within AO353_12640at 2782.754 kb on - strand, within AO353_12640at 2782.754 kb on - strand, within AO353_12640at 2782.859 kb on + strand, within AO353_12640at 2782.859 kb on + strand, within AO353_12640at 2782.859 kb on + strand, within AO353_12640at 2782.860 kb on - strand, within AO353_12640at 2782.877 kb on + strand, within AO353_12640at 2782.877 kb on + strand, within AO353_12640at 2782.877 kb on + strand, within AO353_12640at 2782.877 kb on + strand, within AO353_12640at 2782.883 kb on + strand, within AO353_12640at 2782.883 kb on + strand, within AO353_12640at 2782.883 kb on + strand, within AO353_12640at 2782.883 kb on + strand, within AO353_12640at 2782.883 kb on + strand, within AO353_12640at 2782.883 kb on + strand, within AO353_12640at 2782.883 kb on + strand, within AO353_12640at 2782.883 kb on + strand, within AO353_12640at 2782.883 kb on + strand, within AO353_12640at 2782.883 kb on + strand, within AO353_12640at 2782.883 kb on + strand, within AO353_12640at 2782.883 kb on + strand, within AO353_12640at 2782.883 kb on + strand, within AO353_12640at 2782.883 kb on + strand, within AO353_12640at 2782.883 kb on + strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2782.884 kb on - strand, within AO353_12640at 2783.064 kb on + strand, within AO353_12640at 2783.065 kb on - strand, within AO353_12640at 2783.065 kb on - strand, within AO353_12640at 2783.065 kb on - strand, within AO353_12640at 2783.074 kb on + strand, within AO353_12640at 2783.150 kb on + strand, within AO353_12640at 2783.150 kb on + strand, within AO353_12640at 2783.151 kb on - strand, within AO353_12640at 2783.151 kb on - strand, within AO353_12640at 2783.168 kb on + strand, within AO353_12640at 2783.168 kb on + strand, within AO353_12640at 2783.168 kb on + strand, within AO353_12640at 2783.168 kb on + strand, within AO353_12640at 2783.168 kb on + strand, within AO353_12640at 2783.168 kb on + strand, within AO353_12640at 2783.169 kb on - strand, within AO353_12640at 2783.169 kb on - strand, within AO353_12640at 2783.169 kb on - strand, within AO353_12640at 2783.169 kb on - strand, within AO353_12640at 2783.169 kb on - strand, within AO353_12640at 2783.314 kb on - strandat 2783.527 kb on + strandat 2784.035 kb on + strand, within AO353_12645at 2784.035 kb on + strand, within AO353_12645at 2784.036 kb on - strand, within AO353_12645at 2784.036 kb on - strand, within AO353_12645at 2784.036 kb on - strand, within AO353_12645

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.1 mg/ml
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2,781,695 - AO353_12635 0.63 -0.5
2,781,863 + AO353_12635 0.77 +2.3
2,781,952 - AO353_12635 0.84 +0.0
2,781,952 - AO353_12635 0.84 -0.2
2,782,139 + +0.7
2,782,256 + -0.8
2,782,256 + -0.2
2,782,401 + AO353_12640 0.22 +0.7
2,782,401 + AO353_12640 0.22 -0.1
2,782,579 + AO353_12640 0.38 -0.8
2,782,579 + AO353_12640 0.38 +1.4
2,782,579 + AO353_12640 0.38 -0.1
2,782,579 + AO353_12640 0.38 -0.5
2,782,608 - AO353_12640 0.40 +0.8
2,782,753 + AO353_12640 0.53 -1.4
2,782,753 + AO353_12640 0.53 +0.2
2,782,753 + AO353_12640 0.53 -0.9
2,782,753 + AO353_12640 0.53 +0.3
2,782,754 - AO353_12640 0.53 +0.5
2,782,754 - AO353_12640 0.53 +0.5
2,782,754 - AO353_12640 0.53 -0.7
2,782,859 + AO353_12640 0.62 +0.1
2,782,859 + AO353_12640 0.62 -0.6
2,782,859 + AO353_12640 0.62 +0.9
2,782,860 - AO353_12640 0.62 -0.7
2,782,877 + AO353_12640 0.63 -0.2
2,782,877 + AO353_12640 0.63 -0.5
2,782,877 + AO353_12640 0.63 -0.9
2,782,877 + AO353_12640 0.63 -0.1
2,782,883 + AO353_12640 0.64 +0.3
2,782,883 + AO353_12640 0.64 +1.7
2,782,883 + AO353_12640 0.64 +1.1
2,782,883 + AO353_12640 0.64 +0.2
2,782,883 + AO353_12640 0.64 -0.6
2,782,883 + AO353_12640 0.64 +0.6
2,782,883 + AO353_12640 0.64 -0.6
2,782,883 + AO353_12640 0.64 -1.2
2,782,883 + AO353_12640 0.64 +1.2
2,782,883 + AO353_12640 0.64 -0.1
2,782,883 + AO353_12640 0.64 -0.4
2,782,883 + AO353_12640 0.64 +1.0
2,782,883 + AO353_12640 0.64 +0.4
2,782,883 + AO353_12640 0.64 +1.7
2,782,883 + AO353_12640 0.64 -0.5
2,782,884 - AO353_12640 0.64 -0.7
2,782,884 - AO353_12640 0.64 +0.3
2,782,884 - AO353_12640 0.64 +0.3
2,782,884 - AO353_12640 0.64 -0.4
2,782,884 - AO353_12640 0.64 -0.2
2,782,884 - AO353_12640 0.64 -0.9
2,782,884 - AO353_12640 0.64 +0.1
2,782,884 - AO353_12640 0.64 -1.7
2,782,884 - AO353_12640 0.64 -0.3
2,782,884 - AO353_12640 0.64 -0.5
2,782,884 - AO353_12640 0.64 -0.1
2,782,884 - AO353_12640 0.64 +1.8
2,782,884 - AO353_12640 0.64 -1.5
2,782,884 - AO353_12640 0.64 +0.1
2,782,884 - AO353_12640 0.64 +0.2
2,782,884 - AO353_12640 0.64 -0.0
2,782,884 - AO353_12640 0.64 +0.4
2,782,884 - AO353_12640 0.64 -1.5
2,782,884 - AO353_12640 0.64 -0.6
2,783,064 + AO353_12640 0.80 +0.7
2,783,065 - AO353_12640 0.80 +1.1
2,783,065 - AO353_12640 0.80 -0.3
2,783,065 - AO353_12640 0.80 -0.1
2,783,074 + AO353_12640 0.80 +0.7
2,783,150 + AO353_12640 0.87 +0.1
2,783,150 + AO353_12640 0.87 -0.8
2,783,151 - AO353_12640 0.87 -0.7
2,783,151 - AO353_12640 0.87 +0.2
2,783,168 + AO353_12640 0.88 -0.0
2,783,168 + AO353_12640 0.88 -0.6
2,783,168 + AO353_12640 0.88 -0.2
2,783,168 + AO353_12640 0.88 -0.1
2,783,168 + AO353_12640 0.88 +0.1
2,783,168 + AO353_12640 0.88 -0.3
2,783,169 - AO353_12640 0.89 -0.8
2,783,169 - AO353_12640 0.89 +0.1
2,783,169 - AO353_12640 0.89 +0.8
2,783,169 - AO353_12640 0.89 -0.7
2,783,169 - AO353_12640 0.89 +0.6
2,783,314 - -0.5
2,783,527 + -1.7
2,784,035 + AO353_12645 0.31 -0.7
2,784,035 + AO353_12645 0.31 -0.3
2,784,036 - AO353_12645 0.32 -0.9
2,784,036 - AO353_12645 0.32 +0.2
2,784,036 - AO353_12645 0.32 -0.7

Or see this region's nucleotide sequence