Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10220

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS10210 and ABZR86_RS10215 are separated by 9 nucleotidesABZR86_RS10215 and ABZR86_RS10220 overlap by 4 nucleotidesABZR86_RS10220 and ABZR86_RS10225 are separated by 65 nucleotides ABZR86_RS10210: ABZR86_RS10210 - ADP compounds hydrolase NudE, at 2,266,347 to 2,266,904 _RS10210 ABZR86_RS10215: ABZR86_RS10215 - inositol monophosphatase family protein, at 2,266,914 to 2,267,702 _RS10215 ABZR86_RS10220: ABZR86_RS10220 - type II secretion system protein N, at 2,267,699 to 2,268,478 _RS10220 ABZR86_RS10225: ABZR86_RS10225 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 2,268,544 to 2,269,911 _RS10225 Position (kb) 2267 2268 2269Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2266.799 kb on - strand, within ABZR86_RS10210at 2266.916 kb on - strandat 2266.916 kb on - strandat 2266.916 kb on - strandat 2266.923 kb on + strandat 2267.131 kb on + strand, within ABZR86_RS10215at 2267.132 kb on - strand, within ABZR86_RS10215at 2267.336 kb on - strand, within ABZR86_RS10215at 2267.500 kb on + strand, within ABZR86_RS10215at 2267.500 kb on + strand, within ABZR86_RS10215at 2267.501 kb on - strand, within ABZR86_RS10215at 2267.501 kb on - strand, within ABZR86_RS10215at 2267.501 kb on - strand, within ABZR86_RS10215at 2267.501 kb on - strand, within ABZR86_RS10215at 2267.828 kb on - strand, within ABZR86_RS10220at 2267.841 kb on + strand, within ABZR86_RS10220at 2268.412 kb on - strandat 2268.412 kb on - strandat 2268.703 kb on + strand, within ABZR86_RS10225at 2268.704 kb on - strand, within ABZR86_RS10225at 2268.704 kb on - strand, within ABZR86_RS10225at 2268.738 kb on - strand, within ABZR86_RS10225at 2268.789 kb on + strand, within ABZR86_RS10225at 2268.789 kb on + strand, within ABZR86_RS10225at 2268.947 kb on - strand, within ABZR86_RS10225at 2269.004 kb on - strand, within ABZR86_RS10225at 2269.004 kb on - strand, within ABZR86_RS10225at 2269.004 kb on - strand, within ABZR86_RS10225at 2269.063 kb on + strand, within ABZR86_RS10225at 2269.063 kb on + strand, within ABZR86_RS10225at 2269.063 kb on + strand, within ABZR86_RS10225at 2269.063 kb on + strand, within ABZR86_RS10225at 2269.063 kb on + strand, within ABZR86_RS10225at 2269.063 kb on + strand, within ABZR86_RS10225at 2269.063 kb on + strand, within ABZR86_RS10225at 2269.064 kb on - strand, within ABZR86_RS10225at 2269.112 kb on - strand, within ABZR86_RS10225at 2269.112 kb on - strand, within ABZR86_RS10225at 2269.255 kb on + strand, within ABZR86_RS10225at 2269.255 kb on + strand, within ABZR86_RS10225at 2269.255 kb on + strand, within ABZR86_RS10225at 2269.255 kb on + strand, within ABZR86_RS10225at 2269.255 kb on + strand, within ABZR86_RS10225at 2269.255 kb on + strand, within ABZR86_RS10225at 2269.256 kb on - strand, within ABZR86_RS10225at 2269.256 kb on - strand, within ABZR86_RS10225at 2269.268 kb on - strand, within ABZR86_RS10225at 2269.465 kb on + strand, within ABZR86_RS10225at 2269.466 kb on - strand, within ABZR86_RS10225at 2269.477 kb on + strand, within ABZR86_RS10225at 2269.477 kb on + strand, within ABZR86_RS10225at 2269.477 kb on + strand, within ABZR86_RS10225

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
2,266,799 - ABZR86_RS10210 0.81 -0.5
2,266,916 - -0.3
2,266,916 - +0.5
2,266,916 - +0.3
2,266,923 + -2.1
2,267,131 + ABZR86_RS10215 0.28 -3.3
2,267,132 - ABZR86_RS10215 0.28 -3.4
2,267,336 - ABZR86_RS10215 0.53 -1.7
2,267,500 + ABZR86_RS10215 0.74 -3.9
2,267,500 + ABZR86_RS10215 0.74 -3.7
2,267,501 - ABZR86_RS10215 0.74 -2.4
2,267,501 - ABZR86_RS10215 0.74 -3.3
2,267,501 - ABZR86_RS10215 0.74 -0.9
2,267,501 - ABZR86_RS10215 0.74 -4.1
2,267,828 - ABZR86_RS10220 0.17 +0.4
2,267,841 + ABZR86_RS10220 0.18 -0.5
2,268,412 - -0.2
2,268,412 - +0.2
2,268,703 + ABZR86_RS10225 0.12 +0.6
2,268,704 - ABZR86_RS10225 0.12 +0.1
2,268,704 - ABZR86_RS10225 0.12 -0.3
2,268,738 - ABZR86_RS10225 0.14 -0.3
2,268,789 + ABZR86_RS10225 0.18 +0.1
2,268,789 + ABZR86_RS10225 0.18 +0.0
2,268,947 - ABZR86_RS10225 0.29 +0.5
2,269,004 - ABZR86_RS10225 0.34 +0.5
2,269,004 - ABZR86_RS10225 0.34 +0.3
2,269,004 - ABZR86_RS10225 0.34 -0.2
2,269,063 + ABZR86_RS10225 0.38 +1.1
2,269,063 + ABZR86_RS10225 0.38 +0.4
2,269,063 + ABZR86_RS10225 0.38 +0.3
2,269,063 + ABZR86_RS10225 0.38 +0.3
2,269,063 + ABZR86_RS10225 0.38 -0.6
2,269,063 + ABZR86_RS10225 0.38 +0.3
2,269,063 + ABZR86_RS10225 0.38 -0.2
2,269,064 - ABZR86_RS10225 0.38 -0.3
2,269,112 - ABZR86_RS10225 0.42 +0.4
2,269,112 - ABZR86_RS10225 0.42 +0.4
2,269,255 + ABZR86_RS10225 0.52 -1.0
2,269,255 + ABZR86_RS10225 0.52 +0.8
2,269,255 + ABZR86_RS10225 0.52 -0.4
2,269,255 + ABZR86_RS10225 0.52 -0.3
2,269,255 + ABZR86_RS10225 0.52 -0.5
2,269,255 + ABZR86_RS10225 0.52 -2.2
2,269,256 - ABZR86_RS10225 0.52 -0.5
2,269,256 - ABZR86_RS10225 0.52 +0.2
2,269,268 - ABZR86_RS10225 0.53 +0.8
2,269,465 + ABZR86_RS10225 0.67 +2.1
2,269,466 - ABZR86_RS10225 0.67 +0.4
2,269,477 + ABZR86_RS10225 0.68 +0.5
2,269,477 + ABZR86_RS10225 0.68 -0.5
2,269,477 + ABZR86_RS10225 0.68 +0.5

Or see this region's nucleotide sequence