Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08155

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS08145 and ABZR86_RS08150 are separated by 96 nucleotidesABZR86_RS08150 and ABZR86_RS08155 overlap by 4 nucleotidesABZR86_RS08155 and ABZR86_RS08160 overlap by 4 nucleotides ABZR86_RS08145: ABZR86_RS08145 - DUF2147 domain-containing protein, at 1,816,408 to 1,816,848 _RS08145 ABZR86_RS08150: ABZR86_RS08150 - DeoR/GlpR family DNA-binding transcription regulator, at 1,816,945 to 1,817,757 _RS08150 ABZR86_RS08155: ABZR86_RS08155 - HAD family hydrolase, at 1,817,754 to 1,818,392 _RS08155 ABZR86_RS08160: ABZR86_RS08160 - MFS transporter, at 1,818,389 to 1,819,507 _RS08160 Position (kb) 1817 1818 1819Strain fitness (log2 ratio) -2 -1 0 1at 1816.795 kb on + strand, within ABZR86_RS08145at 1816.796 kb on - strand, within ABZR86_RS08145at 1816.847 kb on - strandat 1816.856 kb on + strandat 1816.856 kb on + strandat 1816.857 kb on - strandat 1816.872 kb on + strandat 1816.872 kb on + strandat 1816.879 kb on + strandat 1816.880 kb on - strandat 1816.893 kb on + strandat 1816.893 kb on + strandat 1816.893 kb on + strandat 1816.894 kb on - strandat 1816.894 kb on - strandat 1816.894 kb on - strandat 1816.894 kb on - strandat 1816.894 kb on - strandat 1816.946 kb on + strandat 1816.947 kb on - strandat 1816.947 kb on - strandat 1816.998 kb on - strandat 1817.626 kb on + strand, within ABZR86_RS08150at 1817.887 kb on + strand, within ABZR86_RS08155at 1817.888 kb on - strand, within ABZR86_RS08155at 1817.888 kb on - strand, within ABZR86_RS08155at 1817.935 kb on + strand, within ABZR86_RS08155at 1817.935 kb on + strand, within ABZR86_RS08155at 1818.010 kb on + strand, within ABZR86_RS08155at 1818.061 kb on + strand, within ABZR86_RS08155at 1818.061 kb on + strand, within ABZR86_RS08155at 1818.061 kb on + strand, within ABZR86_RS08155at 1818.316 kb on + strand, within ABZR86_RS08155at 1818.316 kb on + strand, within ABZR86_RS08155at 1818.316 kb on + strand, within ABZR86_RS08155at 1818.317 kb on - strand, within ABZR86_RS08155at 1818.317 kb on - strand, within ABZR86_RS08155at 1818.317 kb on - strand, within ABZR86_RS08155at 1818.317 kb on - strand, within ABZR86_RS08155at 1818.366 kb on - strandat 1818.519 kb on + strand, within ABZR86_RS08160at 1818.520 kb on - strand, within ABZR86_RS08160at 1818.795 kb on + strand, within ABZR86_RS08160at 1818.796 kb on - strand, within ABZR86_RS08160at 1818.796 kb on - strand, within ABZR86_RS08160at 1818.915 kb on - strand, within ABZR86_RS08160at 1819.209 kb on + strand, within ABZR86_RS08160

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
1,816,795 + ABZR86_RS08145 0.88 -0.3
1,816,796 - ABZR86_RS08145 0.88 -1.6
1,816,847 - +0.1
1,816,856 + +0.5
1,816,856 + +0.1
1,816,857 - +0.4
1,816,872 + +0.2
1,816,872 + -0.0
1,816,879 + -0.4
1,816,880 - -0.0
1,816,893 + -0.1
1,816,893 + -0.3
1,816,893 + +0.1
1,816,894 - +0.9
1,816,894 - -0.5
1,816,894 - -1.2
1,816,894 - -0.3
1,816,894 - -0.3
1,816,946 + -0.6
1,816,947 - +0.7
1,816,947 - -1.1
1,816,998 - -1.0
1,817,626 + ABZR86_RS08150 0.84 +1.0
1,817,887 + ABZR86_RS08155 0.21 +0.7
1,817,888 - ABZR86_RS08155 0.21 +0.4
1,817,888 - ABZR86_RS08155 0.21 -0.2
1,817,935 + ABZR86_RS08155 0.28 +0.8
1,817,935 + ABZR86_RS08155 0.28 -0.1
1,818,010 + ABZR86_RS08155 0.40 +0.2
1,818,061 + ABZR86_RS08155 0.48 +0.6
1,818,061 + ABZR86_RS08155 0.48 +1.0
1,818,061 + ABZR86_RS08155 0.48 +0.2
1,818,316 + ABZR86_RS08155 0.88 +0.6
1,818,316 + ABZR86_RS08155 0.88 -2.1
1,818,316 + ABZR86_RS08155 0.88 -0.4
1,818,317 - ABZR86_RS08155 0.88 -0.9
1,818,317 - ABZR86_RS08155 0.88 +0.4
1,818,317 - ABZR86_RS08155 0.88 +1.1
1,818,317 - ABZR86_RS08155 0.88 +0.2
1,818,366 - +0.1
1,818,519 + ABZR86_RS08160 0.12 +0.2
1,818,520 - ABZR86_RS08160 0.12 +0.0
1,818,795 + ABZR86_RS08160 0.36 -0.3
1,818,796 - ABZR86_RS08160 0.36 -1.3
1,818,796 - ABZR86_RS08160 0.36 -0.1
1,818,915 - ABZR86_RS08160 0.47 +0.1
1,819,209 + ABZR86_RS08160 0.73 +0.5

Or see this region's nucleotide sequence