Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01550

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01540 and ABZR86_RS01545 are separated by 216 nucleotidesABZR86_RS01545 and ABZR86_RS01550 are separated by 36 nucleotidesABZR86_RS01550 and ABZR86_RS01555 are separated by 221 nucleotidesABZR86_RS01555 and ABZR86_RS01560 overlap by 1 nucleotides ABZR86_RS01540: ABZR86_RS01540 - MipA/OmpV family protein, at 335,696 to 336,451 _RS01540 ABZR86_RS01545: ABZR86_RS01545 - DNA-3-methyladenine glycosylase I, at 336,668 to 337,279 _RS01545 ABZR86_RS01550: ABZR86_RS01550 - helix-turn-helix domain-containing GNAT family N-acetyltransferase, at 337,316 to 338,257 _RS01550 ABZR86_RS01555: ABZR86_RS01555 - DUF2239 family protein, at 338,479 to 338,844 _RS01555 ABZR86_RS01560: ABZR86_RS01560 - GIY-YIG nuclease family protein, at 338,844 to 339,194 _RS01560 Position (kb) 337 338 339Strain fitness (log2 ratio) -2 -1 0 1 2at 336.422 kb on + strandat 336.422 kb on + strandat 336.422 kb on + strandat 336.422 kb on + strandat 336.423 kb on - strandat 336.423 kb on - strandat 336.440 kb on + strandat 336.636 kb on + strandat 336.637 kb on - strandat 336.670 kb on - strandat 336.774 kb on + strand, within ABZR86_RS01545at 336.774 kb on + strand, within ABZR86_RS01545at 336.774 kb on + strand, within ABZR86_RS01545at 336.774 kb on + strand, within ABZR86_RS01545at 336.775 kb on - strand, within ABZR86_RS01545at 336.775 kb on - strand, within ABZR86_RS01545at 336.775 kb on - strand, within ABZR86_RS01545at 336.775 kb on - strand, within ABZR86_RS01545at 336.775 kb on - strand, within ABZR86_RS01545at 336.894 kb on + strand, within ABZR86_RS01545at 336.906 kb on + strand, within ABZR86_RS01545at 336.907 kb on - strand, within ABZR86_RS01545at 336.907 kb on - strand, within ABZR86_RS01545at 336.907 kb on - strand, within ABZR86_RS01545at 337.056 kb on + strand, within ABZR86_RS01545at 337.203 kb on + strand, within ABZR86_RS01545at 337.204 kb on - strand, within ABZR86_RS01545at 337.204 kb on - strand, within ABZR86_RS01545at 337.204 kb on - strand, within ABZR86_RS01545at 337.341 kb on + strandat 337.341 kb on + strandat 337.341 kb on + strandat 337.342 kb on - strandat 337.342 kb on - strandat 337.342 kb on - strandat 337.342 kb on - strandat 337.342 kb on - strandat 337.414 kb on - strand, within ABZR86_RS01550at 337.486 kb on - strand, within ABZR86_RS01550at 337.737 kb on + strand, within ABZR86_RS01550at 337.737 kb on + strand, within ABZR86_RS01550at 337.738 kb on - strand, within ABZR86_RS01550at 337.738 kb on - strand, within ABZR86_RS01550at 337.740 kb on + strand, within ABZR86_RS01550at 337.740 kb on + strand, within ABZR86_RS01550at 337.741 kb on - strand, within ABZR86_RS01550at 337.741 kb on - strand, within ABZR86_RS01550at 337.857 kb on + strand, within ABZR86_RS01550at 337.922 kb on + strand, within ABZR86_RS01550at 337.922 kb on + strand, within ABZR86_RS01550at 337.923 kb on - strand, within ABZR86_RS01550at 338.166 kb on + strandat 338.166 kb on + strandat 338.166 kb on + strandat 338.167 kb on - strandat 338.167 kb on - strandat 338.167 kb on - strandat 338.167 kb on - strandat 338.167 kb on - strandat 338.167 kb on - strandat 338.677 kb on + strand, within ABZR86_RS01555at 338.678 kb on - strand, within ABZR86_RS01555at 338.910 kb on + strand, within ABZR86_RS01560at 338.910 kb on + strand, within ABZR86_RS01560at 338.910 kb on + strand, within ABZR86_RS01560at 338.910 kb on + strand, within ABZR86_RS01560at 338.910 kb on + strand, within ABZR86_RS01560at 338.910 kb on + strand, within ABZR86_RS01560at 338.910 kb on + strand, within ABZR86_RS01560at 338.910 kb on + strand, within ABZR86_RS01560at 338.910 kb on + strand, within ABZR86_RS01560at 338.910 kb on + strand, within ABZR86_RS01560at 338.910 kb on + strand, within ABZR86_RS01560at 338.910 kb on + strand, within ABZR86_RS01560at 338.911 kb on - strand, within ABZR86_RS01560at 338.911 kb on - strand, within ABZR86_RS01560at 338.911 kb on - strand, within ABZR86_RS01560at 338.911 kb on - strand, within ABZR86_RS01560at 338.911 kb on - strand, within ABZR86_RS01560at 338.911 kb on - strand, within ABZR86_RS01560at 338.911 kb on - strand, within ABZR86_RS01560at 338.911 kb on - strand, within ABZR86_RS01560at 338.911 kb on - strand, within ABZR86_RS01560at 338.911 kb on - strand, within ABZR86_RS01560at 339.118 kb on - strand, within ABZR86_RS01560at 339.185 kb on + strandat 339.186 kb on + strandat 339.186 kb on + strandat 339.192 kb on + strandat 339.193 kb on - strandat 339.196 kb on + strandat 339.196 kb on + strandat 339.196 kb on + strandat 339.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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336,422 + +0.5
336,422 + +1.1
336,422 + -1.0
336,422 + +1.6
336,423 - -0.4
336,423 - -2.1
336,440 + -1.1
336,636 + -1.9
336,637 - -0.2
336,670 - -0.3
336,774 + ABZR86_RS01545 0.17 +0.1
336,774 + ABZR86_RS01545 0.17 +0.4
336,774 + ABZR86_RS01545 0.17 +0.0
336,774 + ABZR86_RS01545 0.17 -0.2
336,775 - ABZR86_RS01545 0.17 -0.1
336,775 - ABZR86_RS01545 0.17 -1.1
336,775 - ABZR86_RS01545 0.17 +0.1
336,775 - ABZR86_RS01545 0.17 +1.2
336,775 - ABZR86_RS01545 0.17 +0.3
336,894 + ABZR86_RS01545 0.37 -0.2
336,906 + ABZR86_RS01545 0.39 -0.5
336,907 - ABZR86_RS01545 0.39 -0.7
336,907 - ABZR86_RS01545 0.39 +0.4
336,907 - ABZR86_RS01545 0.39 +1.9
337,056 + ABZR86_RS01545 0.63 -0.9
337,203 + ABZR86_RS01545 0.87 -0.8
337,204 - ABZR86_RS01545 0.88 +0.8
337,204 - ABZR86_RS01545 0.88 +0.1
337,204 - ABZR86_RS01545 0.88 +0.0
337,341 + +0.5
337,341 + -1.3
337,341 + +0.2
337,342 - +0.4
337,342 - -0.7
337,342 - -0.1
337,342 - -0.1
337,342 - -0.0
337,414 - ABZR86_RS01550 0.10 -1.1
337,486 - ABZR86_RS01550 0.18 -0.0
337,737 + ABZR86_RS01550 0.45 +0.4
337,737 + ABZR86_RS01550 0.45 +0.5
337,738 - ABZR86_RS01550 0.45 +0.4
337,738 - ABZR86_RS01550 0.45 +0.2
337,740 + ABZR86_RS01550 0.45 +2.3
337,740 + ABZR86_RS01550 0.45 +0.1
337,741 - ABZR86_RS01550 0.45 +0.2
337,741 - ABZR86_RS01550 0.45 -0.4
337,857 + ABZR86_RS01550 0.57 -0.2
337,922 + ABZR86_RS01550 0.64 +0.6
337,922 + ABZR86_RS01550 0.64 +0.4
337,923 - ABZR86_RS01550 0.64 -0.1
338,166 + +0.1
338,166 + +0.3
338,166 + -0.2
338,167 - -0.4
338,167 - +0.4
338,167 - -0.3
338,167 - +0.4
338,167 - +0.0
338,167 - +0.6
338,677 + ABZR86_RS01555 0.54 +0.8
338,678 - ABZR86_RS01555 0.54 +0.0
338,910 + ABZR86_RS01560 0.19 +0.3
338,910 + ABZR86_RS01560 0.19 -0.4
338,910 + ABZR86_RS01560 0.19 +1.0
338,910 + ABZR86_RS01560 0.19 -0.5
338,910 + ABZR86_RS01560 0.19 -0.2
338,910 + ABZR86_RS01560 0.19 -0.3
338,910 + ABZR86_RS01560 0.19 -0.0
338,910 + ABZR86_RS01560 0.19 -0.6
338,910 + ABZR86_RS01560 0.19 -0.6
338,910 + ABZR86_RS01560 0.19 -0.6
338,910 + ABZR86_RS01560 0.19 -0.0
338,910 + ABZR86_RS01560 0.19 -0.4
338,911 - ABZR86_RS01560 0.19 +0.7
338,911 - ABZR86_RS01560 0.19 -0.2
338,911 - ABZR86_RS01560 0.19 +0.3
338,911 - ABZR86_RS01560 0.19 -0.3
338,911 - ABZR86_RS01560 0.19 -1.4
338,911 - ABZR86_RS01560 0.19 -0.2
338,911 - ABZR86_RS01560 0.19 +0.1
338,911 - ABZR86_RS01560 0.19 +0.6
338,911 - ABZR86_RS01560 0.19 -0.0
338,911 - ABZR86_RS01560 0.19 -0.4
339,118 - ABZR86_RS01560 0.78 +0.5
339,185 + +0.5
339,186 + +0.7
339,186 + +0.6
339,192 + +0.1
339,193 - -0.3
339,196 + +0.3
339,196 + -0.4
339,196 + +0.2
339,197 - +0.8

Or see this region's nucleotide sequence