Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4071 and Shewana3_4072 are separated by 14 nucleotides Shewana3_4072 and Shewana3_4073 are separated by 248 nucleotides Shewana3_4073 and Shewana3_4074 are separated by 99 nucleotides Shewana3_4074 and Shewana3_4075 are separated by 255 nucleotides
Shewana3_4071: Shewana3_4071 - isochorismate synthases (RefSeq), at 4,892,786 to 4,894,144
_4071
Shewana3_4072: Shewana3_4072 - hypothetical protein (RefSeq), at 4,894,159 to 4,894,884
_4072
Shewana3_4073: Shewana3_4073 - hypothetical protein (RefSeq), at 4,895,133 to 4,895,786
_4073
Shewana3_4074: Shewana3_4074 - acetyltransferase (RefSeq), at 4,895,886 to 4,896,353
_4074
Shewana3_4075: Shewana3_4075 - ATPase domain-containing protein (RefSeq), at 4,896,609 to 4,898,744
_4075
Position (kb)
4895
4896 Strain fitness (log2 ratio)
-2
-1
0
1 at 4894.313 kb on - strand, within Shewana3_4072 at 4894.519 kb on + strand, within Shewana3_4072 at 4894.523 kb on + strand, within Shewana3_4072 at 4894.527 kb on - strand, within Shewana3_4072 at 4894.637 kb on - strand, within Shewana3_4072 at 4894.649 kb on + strand, within Shewana3_4072 at 4894.693 kb on - strand, within Shewana3_4072 at 4894.693 kb on - strand, within Shewana3_4072 at 4894.910 kb on + strand at 4894.910 kb on - strand at 4894.918 kb on - strand at 4894.934 kb on + strand at 4895.109 kb on - strand at 4895.145 kb on + strand at 4895.590 kb on + strand, within Shewana3_4073 at 4895.640 kb on - strand, within Shewana3_4073 at 4895.694 kb on + strand, within Shewana3_4073 at 4895.695 kb on + strand, within Shewana3_4073 at 4895.700 kb on + strand, within Shewana3_4073 at 4895.703 kb on - strand, within Shewana3_4073 at 4895.709 kb on - strand, within Shewana3_4073 at 4895.923 kb on + strand at 4896.066 kb on + strand, within Shewana3_4074 at 4896.067 kb on + strand, within Shewana3_4074 at 4896.075 kb on - strand, within Shewana3_4074 at 4896.097 kb on - strand, within Shewana3_4074 at 4896.207 kb on - strand, within Shewana3_4074 at 4896.292 kb on - strand, within Shewana3_4074 at 4896.313 kb on + strand at 4896.323 kb on + strand at 4896.655 kb on - strand at 4896.716 kb on - strand at 4896.723 kb on - strand at 4896.725 kb on + strand at 4896.745 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 4,894,313 - Shewana3_4072 0.21 -2.2 4,894,519 + Shewana3_4072 0.50 -0.2 4,894,523 + Shewana3_4072 0.50 -0.6 4,894,527 - Shewana3_4072 0.51 -0.7 4,894,637 - Shewana3_4072 0.66 -0.2 4,894,649 + Shewana3_4072 0.67 +0.0 4,894,693 - Shewana3_4072 0.74 -0.2 4,894,693 - Shewana3_4072 0.74 -0.5 4,894,910 + +0.8 4,894,910 - -0.3 4,894,918 - +0.7 4,894,934 + -0.1 4,895,109 - -0.7 4,895,145 + +0.3 4,895,590 + Shewana3_4073 0.70 -0.7 4,895,640 - Shewana3_4073 0.78 -2.2 4,895,694 + Shewana3_4073 0.86 -0.9 4,895,695 + Shewana3_4073 0.86 +0.6 4,895,700 + Shewana3_4073 0.87 +1.2 4,895,703 - Shewana3_4073 0.87 -1.9 4,895,709 - Shewana3_4073 0.88 -2.4 4,895,923 + +0.9 4,896,066 + Shewana3_4074 0.38 +0.0 4,896,067 + Shewana3_4074 0.39 +0.3 4,896,075 - Shewana3_4074 0.40 -0.2 4,896,097 - Shewana3_4074 0.45 -0.2 4,896,207 - Shewana3_4074 0.69 +0.0 4,896,292 - Shewana3_4074 0.87 -1.0 4,896,313 + +0.1 4,896,323 + +0.0 4,896,655 - +0.0 4,896,716 - +1.1 4,896,723 - +1.5 4,896,725 + -0.6 4,896,745 - -0.0
Or see this region's nucleotide sequence