Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4036 and Shewana3_4037 are separated by 88 nucleotides Shewana3_4037 and Shewana3_4038 are separated by 150 nucleotides
Shewana3_4036: Shewana3_4036 - amidohydrolase 3 (RefSeq), at 4,849,150 to 4,850,955
_4036
Shewana3_4037: Shewana3_4037 - hypothetical protein (RefSeq), at 4,851,044 to 4,851,829
_4037
Shewana3_4038: Shewana3_4038 - hypothetical protein (RefSeq), at 4,851,980 to 4,852,825
_4038
Position (kb)
4851
4852 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4850.099 kb on - strand, within Shewana3_4036 at 4850.123 kb on - strand, within Shewana3_4036 at 4850.123 kb on - strand, within Shewana3_4036 at 4850.123 kb on - strand, within Shewana3_4036 at 4850.175 kb on + strand, within Shewana3_4036 at 4850.235 kb on + strand, within Shewana3_4036 at 4850.292 kb on + strand, within Shewana3_4036 at 4850.292 kb on + strand, within Shewana3_4036 at 4850.300 kb on - strand, within Shewana3_4036 at 4850.300 kb on - strand, within Shewana3_4036 at 4850.537 kb on - strand, within Shewana3_4036 at 4850.542 kb on + strand, within Shewana3_4036 at 4850.887 kb on - strand at 4850.924 kb on - strand at 4850.958 kb on - strand at 4851.167 kb on + strand, within Shewana3_4037 at 4851.167 kb on + strand, within Shewana3_4037 at 4851.167 kb on + strand, within Shewana3_4037 at 4851.167 kb on + strand, within Shewana3_4037 at 4851.175 kb on - strand, within Shewana3_4037 at 4851.280 kb on + strand, within Shewana3_4037 at 4851.436 kb on + strand, within Shewana3_4037 at 4851.449 kb on - strand, within Shewana3_4037 at 4851.478 kb on - strand, within Shewana3_4037 at 4851.534 kb on - strand, within Shewana3_4037 at 4851.670 kb on + strand, within Shewana3_4037 at 4851.670 kb on + strand, within Shewana3_4037 at 4851.678 kb on - strand, within Shewana3_4037 at 4851.789 kb on + strand at 4851.791 kb on - strand at 4851.857 kb on - strand at 4851.880 kb on - strand at 4851.882 kb on + strand at 4851.889 kb on + strand at 4851.920 kb on - strand at 4851.959 kb on - strand at 4852.090 kb on - strand, within Shewana3_4038 at 4852.154 kb on + strand, within Shewana3_4038 at 4852.304 kb on - strand, within Shewana3_4038 at 4852.384 kb on + strand, within Shewana3_4038 at 4852.424 kb on + strand, within Shewana3_4038 at 4852.453 kb on - strand, within Shewana3_4038 at 4852.461 kb on + strand, within Shewana3_4038 at 4852.535 kb on + strand, within Shewana3_4038 at 4852.708 kb on - strand, within Shewana3_4038
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 4,850,099 - Shewana3_4036 0.53 -0.3 4,850,123 - Shewana3_4036 0.54 -0.1 4,850,123 - Shewana3_4036 0.54 -0.2 4,850,123 - Shewana3_4036 0.54 -0.9 4,850,175 + Shewana3_4036 0.57 +0.1 4,850,235 + Shewana3_4036 0.60 -0.3 4,850,292 + Shewana3_4036 0.63 -1.1 4,850,292 + Shewana3_4036 0.63 +0.6 4,850,300 - Shewana3_4036 0.64 +0.4 4,850,300 - Shewana3_4036 0.64 +0.1 4,850,537 - Shewana3_4036 0.77 +0.7 4,850,542 + Shewana3_4036 0.77 -0.3 4,850,887 - -0.8 4,850,924 - -0.5 4,850,958 - -0.2 4,851,167 + Shewana3_4037 0.16 -0.4 4,851,167 + Shewana3_4037 0.16 -1.8 4,851,167 + Shewana3_4037 0.16 -1.0 4,851,167 + Shewana3_4037 0.16 -2.1 4,851,175 - Shewana3_4037 0.17 +0.1 4,851,280 + Shewana3_4037 0.30 -1.5 4,851,436 + Shewana3_4037 0.50 -1.7 4,851,449 - Shewana3_4037 0.52 -1.9 4,851,478 - Shewana3_4037 0.55 -0.7 4,851,534 - Shewana3_4037 0.62 -1.3 4,851,670 + Shewana3_4037 0.80 -1.6 4,851,670 + Shewana3_4037 0.80 +0.4 4,851,678 - Shewana3_4037 0.81 -0.6 4,851,789 + -2.7 4,851,791 - +1.6 4,851,857 - -0.1 4,851,880 - +0.2 4,851,882 + -1.4 4,851,889 + -0.8 4,851,920 - -1.1 4,851,959 - -0.3 4,852,090 - Shewana3_4038 0.13 -1.8 4,852,154 + Shewana3_4038 0.21 +2.4 4,852,304 - Shewana3_4038 0.38 -0.4 4,852,384 + Shewana3_4038 0.48 -1.5 4,852,424 + Shewana3_4038 0.52 +0.7 4,852,453 - Shewana3_4038 0.56 +1.2 4,852,461 + Shewana3_4038 0.57 -0.3 4,852,535 + Shewana3_4038 0.66 +0.2 4,852,708 - Shewana3_4038 0.86 +0.7
Or see this region's nucleotide sequence