Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4027 and Shewana3_4028 are separated by 54 nucleotides Shewana3_4028 and Shewana3_4029 are separated by 76 nucleotides
Shewana3_4027: Shewana3_4027 - hypothetical protein (RefSeq), at 4,837,151 to 4,838,656
_4027
Shewana3_4028: Shewana3_4028 - hypothetical protein (RefSeq), at 4,838,711 to 4,839,187
_4028
Shewana3_4029: Shewana3_4029 - diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) (RefSeq), at 4,839,264 to 4,842,950
_4029
Position (kb)
4838
4839
4840 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4837.740 kb on - strand, within Shewana3_4027 at 4837.915 kb on + strand, within Shewana3_4027 at 4837.969 kb on + strand, within Shewana3_4027 at 4838.034 kb on - strand, within Shewana3_4027 at 4838.078 kb on + strand, within Shewana3_4027 at 4838.137 kb on - strand, within Shewana3_4027 at 4838.173 kb on + strand, within Shewana3_4027 at 4838.176 kb on - strand, within Shewana3_4027 at 4838.250 kb on + strand, within Shewana3_4027 at 4838.304 kb on - strand, within Shewana3_4027 at 4838.304 kb on - strand, within Shewana3_4027 at 4838.436 kb on + strand, within Shewana3_4027 at 4838.436 kb on + strand, within Shewana3_4027 at 4838.510 kb on + strand at 4838.529 kb on + strand at 4838.537 kb on - strand at 4838.537 kb on - strand at 4838.553 kb on + strand at 4838.606 kb on - strand at 4838.639 kb on - strand at 4838.846 kb on - strand, within Shewana3_4028 at 4838.871 kb on + strand, within Shewana3_4028 at 4839.332 kb on + strand at 4839.360 kb on - strand at 4839.388 kb on - strand at 4839.491 kb on + strand at 4839.496 kb on + strand at 4839.515 kb on - strand at 4839.558 kb on - strand at 4839.558 kb on - strand at 4839.667 kb on + strand, within Shewana3_4029 at 4839.677 kb on + strand, within Shewana3_4029 at 4839.787 kb on - strand, within Shewana3_4029 at 4839.835 kb on + strand, within Shewana3_4029 at 4839.967 kb on + strand, within Shewana3_4029 at 4839.991 kb on - strand, within Shewana3_4029 at 4840.005 kb on + strand, within Shewana3_4029 at 4840.013 kb on - strand, within Shewana3_4029 at 4840.013 kb on - strand, within Shewana3_4029 at 4840.153 kb on + strand, within Shewana3_4029 at 4840.171 kb on - strand, within Shewana3_4029
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 4,837,740 - Shewana3_4027 0.39 -0.5 4,837,915 + Shewana3_4027 0.51 +1.4 4,837,969 + Shewana3_4027 0.54 +0.8 4,838,034 - Shewana3_4027 0.59 +0.2 4,838,078 + Shewana3_4027 0.62 +1.1 4,838,137 - Shewana3_4027 0.65 +0.1 4,838,173 + Shewana3_4027 0.68 -0.0 4,838,176 - Shewana3_4027 0.68 +0.2 4,838,250 + Shewana3_4027 0.73 +0.6 4,838,304 - Shewana3_4027 0.77 +2.0 4,838,304 - Shewana3_4027 0.77 +0.1 4,838,436 + Shewana3_4027 0.85 +0.1 4,838,436 + Shewana3_4027 0.85 +0.1 4,838,510 + +0.1 4,838,529 + +0.1 4,838,537 - +0.3 4,838,537 - -0.3 4,838,553 + +0.5 4,838,606 - -0.2 4,838,639 - -0.3 4,838,846 - Shewana3_4028 0.28 +0.7 4,838,871 + Shewana3_4028 0.34 +0.1 4,839,332 + -0.9 4,839,360 - +0.4 4,839,388 - +0.2 4,839,491 + -0.6 4,839,496 + -0.1 4,839,515 - +0.6 4,839,558 - +0.0 4,839,558 - +0.1 4,839,667 + Shewana3_4029 0.11 +0.0 4,839,677 + Shewana3_4029 0.11 -0.4 4,839,787 - Shewana3_4029 0.14 +0.0 4,839,835 + Shewana3_4029 0.15 -1.4 4,839,967 + Shewana3_4029 0.19 -0.4 4,839,991 - Shewana3_4029 0.20 +0.9 4,840,005 + Shewana3_4029 0.20 -1.8 4,840,013 - Shewana3_4029 0.20 +0.0 4,840,013 - Shewana3_4029 0.20 +2.2 4,840,153 + Shewana3_4029 0.24 -1.0 4,840,171 - Shewana3_4029 0.25 -0.5
Or see this region's nucleotide sequence