Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4011
Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Spectinomycin 0.025 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,813,666 | + | Shewana3_4009 | 0.86 | +0.0 | |
4,813,780 | - | -1.3 | |||
4,814,598 | - | +0.0 | |||
4,815,144 | + | Shewana3_4011 | 0.88 | +0.7 | |
4,815,154 | + | Shewana3_4011 | 0.90 | +0.5 | |
4,815,183 | - | +0.2 | |||
4,815,310 | + | +0.3 | |||
4,815,335 | + | +0.5 | |||
4,815,513 | + | Shewana3_4012 | 0.12 | +0.5 | |
4,815,544 | - | Shewana3_4012 | 0.14 | +0.6 | |
4,815,544 | - | Shewana3_4012 | 0.14 | +1.1 | |
4,815,546 | + | Shewana3_4012 | 0.14 | -1.5 | |
4,815,701 | - | Shewana3_4012 | 0.22 | +0.7 | |
4,815,823 | + | Shewana3_4012 | 0.28 | +0.3 | |
4,815,823 | + | Shewana3_4012 | 0.28 | -0.2 | |
4,815,841 | + | Shewana3_4012 | 0.29 | +0.0 | |
4,815,849 | - | Shewana3_4012 | 0.29 | +0.0 | |
4,815,849 | - | Shewana3_4012 | 0.29 | +0.3 | |
4,815,956 | + | Shewana3_4012 | 0.35 | -0.2 |
Or see this region's nucleotide sequence