Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4011

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4009 and Shewana3_4010 are separated by 25 nucleotidesShewana3_4010 and Shewana3_4011 are separated by 61 nucleotidesShewana3_4011 and Shewana3_4012 are separated by 66 nucleotides Shewana3_4009: Shewana3_4009 - competence protein ComF (RefSeq), at 4,812,987 to 4,813,775 _4009 Shewana3_4010: Shewana3_4010 - bioH protein (RefSeq), at 4,813,801 to 4,814,595 _4010 Shewana3_4011: Shewana3_4011 - hypothetical protein (RefSeq), at 4,814,657 to 4,815,211 _4011 Shewana3_4012: Shewana3_4012 - sulfatase (RefSeq), at 4,815,278 to 4,817,242 _4012 Position (kb) 4814 4815 4816Strain fitness (log2 ratio) -1 0 1at 4813.666 kb on + strand, within Shewana3_4009at 4813.780 kb on - strandat 4814.598 kb on - strandat 4815.144 kb on + strand, within Shewana3_4011at 4815.154 kb on + strand, within Shewana3_4011at 4815.183 kb on - strandat 4815.310 kb on + strandat 4815.335 kb on + strandat 4815.513 kb on + strand, within Shewana3_4012at 4815.544 kb on - strand, within Shewana3_4012at 4815.544 kb on - strand, within Shewana3_4012at 4815.546 kb on + strand, within Shewana3_4012at 4815.701 kb on - strand, within Shewana3_4012at 4815.823 kb on + strand, within Shewana3_4012at 4815.823 kb on + strand, within Shewana3_4012at 4815.841 kb on + strand, within Shewana3_4012at 4815.849 kb on - strand, within Shewana3_4012at 4815.849 kb on - strand, within Shewana3_4012at 4815.956 kb on + strand, within Shewana3_4012

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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4,813,666 + Shewana3_4009 0.86 +0.0
4,813,780 - -1.3
4,814,598 - +0.0
4,815,144 + Shewana3_4011 0.88 +0.7
4,815,154 + Shewana3_4011 0.90 +0.5
4,815,183 - +0.2
4,815,310 + +0.3
4,815,335 + +0.5
4,815,513 + Shewana3_4012 0.12 +0.5
4,815,544 - Shewana3_4012 0.14 +0.6
4,815,544 - Shewana3_4012 0.14 +1.1
4,815,546 + Shewana3_4012 0.14 -1.5
4,815,701 - Shewana3_4012 0.22 +0.7
4,815,823 + Shewana3_4012 0.28 +0.3
4,815,823 + Shewana3_4012 0.28 -0.2
4,815,841 + Shewana3_4012 0.29 +0.0
4,815,849 - Shewana3_4012 0.29 +0.0
4,815,849 - Shewana3_4012 0.29 +0.3
4,815,956 + Shewana3_4012 0.35 -0.2

Or see this region's nucleotide sequence