Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3920

Experiment: Spectinomycin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.025 mg/ml
4,708,123	-		Shewana3_3918	0.61	+1.1
4,708,166	+		Shewana3_3918	0.65	+0.6
4,708,230	+		Shewana3_3918	0.71	+0.9
4,708,238	-		Shewana3_3918	0.72	-1.1
4,708,263	-		Shewana3_3918	0.75	-1.0
4,708,300	+		Shewana3_3918	0.78	+0.7
4,708,330	+		Shewana3_3918	0.81	+0.2
4,708,414	+		Shewana3_3918	0.89	+0.7
4,708,422	-				-0.3
4,708,435	+				+1.0
4,708,449	+				+0.5
4,708,545	-				-2.7
4,708,760	+				+0.7
4,708,878	+				+0.1
4,708,879	+				-0.2
4,708,903	+				+0.0
4,709,015	-		Shewana3_3919	0.55	-0.1
4,709,015	-		Shewana3_3919	0.55	+0.0
4,709,035	+		Shewana3_3919	0.65	-0.3
4,709,045	+		Shewana3_3919	0.70	-0.0
4,709,045	+		Shewana3_3919	0.70	-0.2
4,709,045	+		Shewana3_3919	0.70	-0.4
4,709,053	-		Shewana3_3919	0.74	+0.3
4,709,053	-		Shewana3_3919	0.74	-0.9
4,709,053	-		Shewana3_3919	0.74	+0.6
4,709,053	-		Shewana3_3919	0.74	-0.6
4,709,053	-		Shewana3_3919	0.74	-0.1
4,709,053	-		Shewana3_3919	0.74	+0.6
4,709,053	-		Shewana3_3919	0.74	+0.8
4,709,057	+		Shewana3_3919	0.76	-0.1
4,709,057	+		Shewana3_3919	0.76	-0.1
4,709,057	+		Shewana3_3919	0.76	-0.7
4,709,240	+				-1.5
4,709,255	+				-1.5
4,709,285	+				-0.7
4,709,392	-				-0.9
4,709,523	+		Shewana3_3920	0.14	-0.7
4,709,737	+		Shewana3_3920	0.22	+0.1
4,709,745	-		Shewana3_3920	0.22	-1.0
4,709,745	-		Shewana3_3920	0.22	-2.2
4,709,916	+		Shewana3_3920	0.28	-1.0
4,709,916	+		Shewana3_3920	0.28	-0.6
4,709,939	-		Shewana3_3920	0.29	-2.3
4,709,949	+		Shewana3_3920	0.29	-0.6
4,710,003	-		Shewana3_3920	0.31	+0.2
4,710,013	-		Shewana3_3920	0.31	-1.4
4,710,082	-		Shewana3_3920	0.34	-0.7
4,710,163	+		Shewana3_3920	0.36	+0.1
4,710,175	+		Shewana3_3920	0.37	-1.0
4,710,190	-		Shewana3_3920	0.37	+0.2
4,710,310	+		Shewana3_3920	0.42	+0.1
4,710,311	+		Shewana3_3920	0.42	-2.4
4,710,350	+		Shewana3_3920	0.43	-0.2
4,710,378	+		Shewana3_3920	0.44	+0.4
4,710,388	-		Shewana3_3920	0.44	-1.8
4,710,406	-		Shewana3_3920	0.45	+0.0
4,710,565	+		Shewana3_3920	0.51	+0.3
4,710,573	-		Shewana3_3920	0.51	-0.2
4,710,706	-		Shewana3_3920	0.55	-1.4
4,710,709	+		Shewana3_3920	0.56	-0.6
4,710,730	+		Shewana3_3920	0.56	-0.6
4,710,744	+		Shewana3_3920	0.57	-0.3
4,710,749	+		Shewana3_3920	0.57	-0.1
4,710,941	+		Shewana3_3920	0.64	+1.1
4,710,956	-		Shewana3_3920	0.64	-0.1
4,710,956	-		Shewana3_3920	0.64	-0.5
4,710,972	+		Shewana3_3920	0.65	-0.8
4,710,972	-		Shewana3_3920	0.65	-1.3
4,711,368	+		Shewana3_3920	0.79	+0.4
4,711,431	-		Shewana3_3920	0.81	-0.8
4,711,445	+		Shewana3_3920	0.81	+0.4
4,711,455	-		Shewana3_3920	0.82	-0.4
4,711,520	+		Shewana3_3920	0.84	+0.7
4,711,533	-		Shewana3_3920	0.84	+0.4
4,711,630	+		Shewana3_3920	0.88	+0.5
4,711,645	+		Shewana3_3920	0.88	+0.2
4,711,747	+				-0.9
4,711,795	-				-0.2
4,711,860	+				+0.5
4,711,868	-				-0.3
4,711,981	+				+0.3
4,711,988	-				-0.1
4,712,163	-		Shewana3_3921	0.28	-0.7
4,712,522	+				+0.0
4,712,695	+				+0.5
4,712,695	+				+1.0
4,712,795	+		Shewana3_3922	0.15	+1.3
4,712,803	-		Shewana3_3922	0.15	+0.2
4,712,863	-		Shewana3_3922	0.22	+0.2
4,712,877	+		Shewana3_3922	0.23	+0.4
4,712,877	+		Shewana3_3922	0.23	+1.0