Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3830 and Shewana3_3831 are separated by 156 nucleotides Shewana3_3831 and Shewana3_3832 are separated by 28 nucleotides Shewana3_3832 and Shewana3_3833 are separated by 17 nucleotides Shewana3_3833 and Shewana3_3834 are separated by 158 nucleotides
Shewana3_3830: Shewana3_3830 - branched-chain amino acid aminotransferase (RefSeq), at 4,603,436 to 4,604,527
_3830
Shewana3_3831: Shewana3_3831 - uncharacterized secreted protein (RefSeq), at 4,604,684 to 4,605,541
_3831
Shewana3_3832: Shewana3_3832 - transcriptional antiterminator, Rof (RefSeq), at 4,605,570 to 4,605,836
_3832
Shewana3_3833: Shewana3_3833 - hypothetical protein (RefSeq), at 4,605,854 to 4,606,189
_3833
Shewana3_3834: Shewana3_3834 - endoribonuclease L-PSP (RefSeq), at 4,606,348 to 4,606,704
_3834
Position (kb)
4604
4605
4606 Strain fitness (log2 ratio)
-2
-1
0
1 at 4603.734 kb on - strand, within Shewana3_3830 at 4603.883 kb on - strand, within Shewana3_3830 at 4603.883 kb on - strand, within Shewana3_3830 at 4604.036 kb on + strand, within Shewana3_3830 at 4604.036 kb on + strand, within Shewana3_3830 at 4604.083 kb on + strand, within Shewana3_3830 at 4604.163 kb on - strand, within Shewana3_3830 at 4604.328 kb on + strand, within Shewana3_3830 at 4604.336 kb on - strand, within Shewana3_3830 at 4604.436 kb on + strand at 4604.444 kb on - strand at 4604.444 kb on - strand at 4604.455 kb on - strand at 4604.713 kb on + strand at 4604.888 kb on + strand, within Shewana3_3831 at 4605.008 kb on - strand, within Shewana3_3831 at 4605.135 kb on + strand, within Shewana3_3831 at 4605.258 kb on - strand, within Shewana3_3831 at 4605.346 kb on - strand, within Shewana3_3831 at 4605.347 kb on - strand, within Shewana3_3831 at 4605.365 kb on + strand, within Shewana3_3831 at 4605.408 kb on + strand, within Shewana3_3831 at 4605.410 kb on + strand, within Shewana3_3831 at 4605.435 kb on - strand, within Shewana3_3831 at 4605.600 kb on - strand, within Shewana3_3832 at 4605.618 kb on - strand, within Shewana3_3832 at 4605.634 kb on + strand, within Shewana3_3832 at 4605.654 kb on - strand, within Shewana3_3832 at 4605.654 kb on - strand, within Shewana3_3832 at 4605.693 kb on + strand, within Shewana3_3832 at 4605.698 kb on + strand, within Shewana3_3832 at 4605.701 kb on - strand, within Shewana3_3832 at 4605.869 kb on - strand at 4605.957 kb on + strand, within Shewana3_3833 at 4606.294 kb on - strand at 4606.530 kb on + strand, within Shewana3_3834
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 4,603,734 - Shewana3_3830 0.27 +0.4 4,603,883 - Shewana3_3830 0.41 +0.4 4,603,883 - Shewana3_3830 0.41 +0.7 4,604,036 + Shewana3_3830 0.55 -1.7 4,604,036 + Shewana3_3830 0.55 -2.6 4,604,083 + Shewana3_3830 0.59 -1.8 4,604,163 - Shewana3_3830 0.67 +1.0 4,604,328 + Shewana3_3830 0.82 -1.8 4,604,336 - Shewana3_3830 0.82 +0.6 4,604,436 + -1.3 4,604,444 - +0.0 4,604,444 - -1.2 4,604,455 - -0.4 4,604,713 + -0.3 4,604,888 + Shewana3_3831 0.24 -2.6 4,605,008 - Shewana3_3831 0.38 -0.8 4,605,135 + Shewana3_3831 0.53 +0.2 4,605,258 - Shewana3_3831 0.67 +0.5 4,605,346 - Shewana3_3831 0.77 -0.6 4,605,347 - Shewana3_3831 0.77 +0.7 4,605,365 + Shewana3_3831 0.79 +0.5 4,605,408 + Shewana3_3831 0.84 +0.6 4,605,410 + Shewana3_3831 0.85 +0.5 4,605,435 - Shewana3_3831 0.88 +0.1 4,605,600 - Shewana3_3832 0.11 +0.7 4,605,618 - Shewana3_3832 0.18 -0.0 4,605,634 + Shewana3_3832 0.24 +0.4 4,605,654 - Shewana3_3832 0.31 +0.3 4,605,654 - Shewana3_3832 0.31 -0.0 4,605,693 + Shewana3_3832 0.46 -0.7 4,605,698 + Shewana3_3832 0.48 -0.1 4,605,701 - Shewana3_3832 0.49 +0.5 4,605,869 - +0.1 4,605,957 + Shewana3_3833 0.31 -0.2 4,606,294 - -0.7 4,606,530 + Shewana3_3834 0.51 -0.1
Or see this region's nucleotide sequence