Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3829

Experiment: Spectinomycin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.025 mg/ml
4,597,966	-		Shewana3_3828	0.48	-0.3
4,597,969	+		Shewana3_3828	0.49	+0.6
4,598,006	+		Shewana3_3828	0.52	+0.5
4,598,072	+		Shewana3_3828	0.57	-0.5
4,598,191	+		Shewana3_3828	0.67	+0.9
4,598,463	+				-0.2
4,598,463	+				-0.0
4,598,664	-				+0.0
4,598,744	-				+0.5
4,598,896	+				+0.6
4,598,978	-				-0.5
4,599,051	-				-1.6
4,599,254	+				-0.5
4,599,269	+				-1.8
4,599,277	-				-1.6
4,599,583	-		Shewana3_3829	0.16	+0.0
4,599,693	-		Shewana3_3829	0.18	-0.2
4,599,978	+		Shewana3_3829	0.25	-1.0
4,599,986	-		Shewana3_3829	0.25	-0.5
4,600,030	-		Shewana3_3829	0.26	-0.8
4,600,034	+		Shewana3_3829	0.26	-1.2
4,600,123	+		Shewana3_3829	0.28	-0.5
4,600,175	+		Shewana3_3829	0.29	-0.4
4,600,175	+		Shewana3_3829	0.29	-0.3
4,600,203	+		Shewana3_3829	0.30	-3.3
4,600,203	+		Shewana3_3829	0.30	+0.0
4,600,203	+		Shewana3_3829	0.30	-0.3
4,600,211	-		Shewana3_3829	0.30	-0.5
4,600,256	+		Shewana3_3829	0.31	-0.8
4,600,343	-		Shewana3_3829	0.33	-0.4
4,600,385	+		Shewana3_3829	0.34	+0.1
4,600,418	-		Shewana3_3829	0.34	-0.6
4,600,468	+		Shewana3_3829	0.36	+0.1
4,600,468	+		Shewana3_3829	0.36	-0.6
4,600,468	+		Shewana3_3829	0.36	-0.2
4,600,468	+		Shewana3_3829	0.36	-1.9
4,600,468	+		Shewana3_3829	0.36	-0.3
4,600,476	-		Shewana3_3829	0.36	-0.6
4,600,568	-		Shewana3_3829	0.38	-0.7
4,600,568	-		Shewana3_3829	0.38	-1.6
4,600,568	-		Shewana3_3829	0.38	-1.5
4,600,568	-		Shewana3_3829	0.38	-0.3
4,600,682	-		Shewana3_3829	0.40	-0.6
4,600,952	-		Shewana3_3829	0.46	-0.1
4,601,095	-		Shewana3_3829	0.49	-1.6
4,601,127	+		Shewana3_3829	0.50	+0.3
4,601,165	+		Shewana3_3829	0.51	+0.0
4,601,170	+		Shewana3_3829	0.51	+0.1
4,601,173	-		Shewana3_3829	0.51	-1.2
4,601,178	-		Shewana3_3829	0.51	+0.0
4,601,272	-		Shewana3_3829	0.53	-0.2
4,601,277	-		Shewana3_3829	0.53	-1.2
4,601,479	-		Shewana3_3829	0.58	-0.5
4,601,479	-		Shewana3_3829	0.58	+0.6
4,601,479	-		Shewana3_3829	0.58	+1.1
4,601,534	-		Shewana3_3829	0.59	-0.3
4,601,701	-		Shewana3_3829	0.63	+0.1
4,601,742	-		Shewana3_3829	0.64	+1.0
4,601,752	-		Shewana3_3829	0.64	+0.8
4,601,883	-		Shewana3_3829	0.67	-0.5
4,601,908	-		Shewana3_3829	0.67	+0.3
4,601,908	-		Shewana3_3829	0.67	+0.2
4,602,316	+		Shewana3_3829	0.76	+0.5
4,602,513	+		Shewana3_3829	0.81	-0.2
4,602,545	-		Shewana3_3829	0.82	+0.1
4,602,637	-		Shewana3_3829	0.84	-0.6
4,602,655	+		Shewana3_3829	0.84	-0.5
4,602,673	-		Shewana3_3829	0.84	-1.4
4,602,710	+		Shewana3_3829	0.85	-0.7
4,602,894	-		Shewana3_3829	0.89	-0.5
4,602,917	-		Shewana3_3829	0.90	-0.3
4,603,057	+				+0.4
4,603,057	+				-0.0
4,603,189	+				+0.5
4,603,212	-				-0.4
4,603,303	+				+1.4
4,603,335	-				-0.4
4,603,346	+				+0.2
4,603,399	+				+1.8
4,603,399	+				-0.3
4,603,399	+				-0.1
4,603,466	-				+2.1
4,603,734	-		Shewana3_3830	0.27	+0.4
4,603,883	-		Shewana3_3830	0.41	+0.4
4,603,883	-		Shewana3_3830	0.41	+0.7
4,604,036	+		Shewana3_3830	0.55	-1.7
4,604,036	+		Shewana3_3830	0.55	-2.6
4,604,083	+		Shewana3_3830	0.59	-1.8
4,604,163	-		Shewana3_3830	0.67	+1.0
4,604,328	+		Shewana3_3830	0.82	-1.8
4,604,336	-		Shewana3_3830	0.82	+0.6