Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3708 and Shewana3_3709 overlap by 8 nucleotides Shewana3_3709 and Shewana3_3710 are separated by 126 nucleotides
Shewana3_3708: Shewana3_3708 - ATPase domain-containing protein (RefSeq), at 4,449,336 to 4,450,625
_3708
Shewana3_3709: Shewana3_3709 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 4,450,618 to 4,451,547
_3709
Shewana3_3710: Shewana3_3710 - hypothetical protein (RefSeq), at 4,451,674 to 4,453,575
_3710
Position (kb)
4450
4451
4452 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4449.678 kb on + strand, within Shewana3_3708 at 4449.715 kb on + strand, within Shewana3_3708 at 4449.753 kb on - strand, within Shewana3_3708 at 4449.891 kb on + strand, within Shewana3_3708 at 4449.899 kb on - strand, within Shewana3_3708 at 4450.055 kb on - strand, within Shewana3_3708 at 4450.112 kb on + strand, within Shewana3_3708 at 4450.125 kb on - strand, within Shewana3_3708 at 4450.232 kb on + strand, within Shewana3_3708 at 4450.240 kb on - strand, within Shewana3_3708 at 4450.394 kb on + strand, within Shewana3_3708 at 4450.404 kb on - strand, within Shewana3_3708 at 4450.429 kb on + strand, within Shewana3_3708 at 4450.519 kb on - strand at 4450.567 kb on + strand at 4450.567 kb on + strand at 4450.567 kb on - strand at 4450.575 kb on - strand at 4450.788 kb on - strand, within Shewana3_3709 at 4450.797 kb on + strand, within Shewana3_3709 at 4450.822 kb on - strand, within Shewana3_3709 at 4450.833 kb on + strand, within Shewana3_3709 at 4451.118 kb on + strand, within Shewana3_3709 at 4451.121 kb on - strand, within Shewana3_3709 at 4451.126 kb on - strand, within Shewana3_3709 at 4451.174 kb on - strand, within Shewana3_3709 at 4451.199 kb on - strand, within Shewana3_3709 at 4451.303 kb on - strand, within Shewana3_3709 at 4451.328 kb on + strand, within Shewana3_3709 at 4451.328 kb on + strand, within Shewana3_3709 at 4451.381 kb on - strand, within Shewana3_3709 at 4451.623 kb on - strand at 4451.642 kb on - strand at 4451.731 kb on - strand at 4451.754 kb on - strand at 4451.792 kb on + strand at 4451.994 kb on - strand, within Shewana3_3710 at 4452.177 kb on - strand, within Shewana3_3710 at 4452.261 kb on - strand, within Shewana3_3710 at 4452.515 kb on - strand, within Shewana3_3710
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 4,449,678 + Shewana3_3708 0.27 -0.7 4,449,715 + Shewana3_3708 0.29 +0.2 4,449,753 - Shewana3_3708 0.32 +0.5 4,449,891 + Shewana3_3708 0.43 +1.1 4,449,899 - Shewana3_3708 0.44 +1.2 4,450,055 - Shewana3_3708 0.56 +0.8 4,450,112 + Shewana3_3708 0.60 -0.3 4,450,125 - Shewana3_3708 0.61 +1.8 4,450,232 + Shewana3_3708 0.69 +0.9 4,450,240 - Shewana3_3708 0.70 +0.7 4,450,394 + Shewana3_3708 0.82 -3.0 4,450,404 - Shewana3_3708 0.83 +0.2 4,450,429 + Shewana3_3708 0.85 -0.5 4,450,519 - +0.5 4,450,567 + -1.4 4,450,567 + +0.9 4,450,567 - -0.4 4,450,575 - -0.6 4,450,788 - Shewana3_3709 0.18 -0.0 4,450,797 + Shewana3_3709 0.19 +0.7 4,450,822 - Shewana3_3709 0.22 +0.3 4,450,833 + Shewana3_3709 0.23 +0.4 4,451,118 + Shewana3_3709 0.54 +0.0 4,451,121 - Shewana3_3709 0.54 +0.2 4,451,126 - Shewana3_3709 0.55 +0.3 4,451,174 - Shewana3_3709 0.60 +0.5 4,451,199 - Shewana3_3709 0.62 -0.6 4,451,303 - Shewana3_3709 0.74 -0.2 4,451,328 + Shewana3_3709 0.76 +0.5 4,451,328 + Shewana3_3709 0.76 +0.2 4,451,381 - Shewana3_3709 0.82 +0.8 4,451,623 - +0.4 4,451,642 - -0.0 4,451,731 - +0.2 4,451,754 - -0.1 4,451,792 + -1.9 4,451,994 - Shewana3_3710 0.17 -0.2 4,452,177 - Shewana3_3710 0.26 -0.1 4,452,261 - Shewana3_3710 0.31 -0.2 4,452,515 - Shewana3_3710 0.44 -0.1
Or see this region's nucleotide sequence