Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3686 and Shewana3_3687 are separated by 161 nucleotides Shewana3_3687 and Shewana3_3688 are separated by 485 nucleotides Shewana3_3688 and Shewana3_3689 are separated by 178 nucleotides
Shewana3_3686: Shewana3_3686 - LysR family transcriptional regulator (RefSeq), at 4,425,469 to 4,426,308
_3686
Shewana3_3687: Shewana3_3687 - short-chain dehydrogenase/reductase SDR (RefSeq), at 4,426,470 to 4,427,201
_3687
Shewana3_3688: Shewana3_3688 - cytochrome c family protein (RefSeq), at 4,427,687 to 4,428,016
_3688
Shewana3_3689: Shewana3_3689 - hypothetical protein (RefSeq), at 4,428,195 to 4,429,925
_3689
Position (kb)
4426
4427
4428 Strain fitness (log2 ratio)
-2
-1
0
1 at 4425.536 kb on + strand at 4425.570 kb on - strand, within Shewana3_3686 at 4425.586 kb on - strand, within Shewana3_3686 at 4425.773 kb on - strand, within Shewana3_3686 at 4425.780 kb on + strand, within Shewana3_3686 at 4425.811 kb on - strand, within Shewana3_3686 at 4425.876 kb on + strand, within Shewana3_3686 at 4425.888 kb on + strand, within Shewana3_3686 at 4425.896 kb on - strand, within Shewana3_3686 at 4425.898 kb on + strand, within Shewana3_3686 at 4425.898 kb on + strand, within Shewana3_3686 at 4425.898 kb on + strand, within Shewana3_3686 at 4425.906 kb on - strand, within Shewana3_3686 at 4425.951 kb on - strand, within Shewana3_3686 at 4425.958 kb on + strand, within Shewana3_3686 at 4426.137 kb on - strand, within Shewana3_3686 at 4426.194 kb on + strand, within Shewana3_3686 at 4426.202 kb on - strand, within Shewana3_3686 at 4426.398 kb on + strand at 4426.525 kb on - strand at 4426.805 kb on + strand, within Shewana3_3687 at 4426.871 kb on - strand, within Shewana3_3687 at 4426.878 kb on + strand, within Shewana3_3687 at 4426.895 kb on - strand, within Shewana3_3687 at 4426.981 kb on + strand, within Shewana3_3687 at 4427.012 kb on + strand, within Shewana3_3687 at 4427.025 kb on - strand, within Shewana3_3687 at 4427.066 kb on - strand, within Shewana3_3687 at 4427.087 kb on - strand, within Shewana3_3687 at 4427.203 kb on - strand at 4427.770 kb on - strand, within Shewana3_3688 at 4427.963 kb on - strand, within Shewana3_3688 at 4428.046 kb on + strand at 4428.054 kb on - strand at 4428.073 kb on - strand at 4428.119 kb on + strand at 4428.127 kb on - strand at 4428.127 kb on - strand at 4428.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 4,425,536 + -0.1 4,425,570 - Shewana3_3686 0.12 +0.5 4,425,586 - Shewana3_3686 0.14 +0.4 4,425,773 - Shewana3_3686 0.36 +1.0 4,425,780 + Shewana3_3686 0.37 -0.7 4,425,811 - Shewana3_3686 0.41 -0.7 4,425,876 + Shewana3_3686 0.48 -0.9 4,425,888 + Shewana3_3686 0.50 +0.1 4,425,896 - Shewana3_3686 0.51 +0.3 4,425,898 + Shewana3_3686 0.51 -0.1 4,425,898 + Shewana3_3686 0.51 -0.2 4,425,898 + Shewana3_3686 0.51 -0.8 4,425,906 - Shewana3_3686 0.52 +0.4 4,425,951 - Shewana3_3686 0.57 +0.5 4,425,958 + Shewana3_3686 0.58 -0.7 4,426,137 - Shewana3_3686 0.80 +0.4 4,426,194 + Shewana3_3686 0.86 -0.9 4,426,202 - Shewana3_3686 0.87 -0.2 4,426,398 + +0.7 4,426,525 - -0.7 4,426,805 + Shewana3_3687 0.46 -0.1 4,426,871 - Shewana3_3687 0.55 +0.0 4,426,878 + Shewana3_3687 0.56 +1.2 4,426,895 - Shewana3_3687 0.58 +0.5 4,426,981 + Shewana3_3687 0.70 +1.1 4,427,012 + Shewana3_3687 0.74 -0.2 4,427,025 - Shewana3_3687 0.76 +0.5 4,427,066 - Shewana3_3687 0.81 +0.2 4,427,087 - Shewana3_3687 0.84 +1.4 4,427,203 - -1.0 4,427,770 - Shewana3_3688 0.25 +0.4 4,427,963 - Shewana3_3688 0.84 -2.6 4,428,046 + -0.8 4,428,054 - +0.2 4,428,073 - +0.0 4,428,119 + +0.2 4,428,127 - -0.3 4,428,127 - -0.9 4,428,127 - +0.3
Or see this region's nucleotide sequence